Mercurial > repos > iuc > pygenometracks

annotate test-data/test12.ini @ 15:c7af51147b55 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
author iuc
date Wed, 01 Oct 2025 19:34:28 +0000
parents 2f09a07c94ab
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
1 [x-axis]
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
2 where = top
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 5
diff changeset
3 [hic_section_1_0]
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
4 file = Li_et_al_2015.h5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
5 file_type = hic_matrix
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
6 title = Kc DpnII (Li et al. 2015)
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
7 depth = 190000
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
8 colormap = Purples
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
9 transform = no
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
10 scale_factor = 1.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
11 rasterize = true
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 5
diff changeset
12 [links_2]
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
13 file = test.arcs
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
14 height = 1.5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
15 color = red
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
16 alpha = 1.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
17 line_width = 10.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
18 line_style = solid
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
19 links_type = loops
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
20 overlay_previous = share-y
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
21 file_type = links
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 5
diff changeset
22 [links_3]
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
23 file = test.arcs
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
24 title = test.arcs
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
25 height = 5.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
26 max_value = 5.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
27 color = hot
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
28 alpha = 1.0
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
29 line_width = 0.5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
30 line_style = solid
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
31 links_type = arcs
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 5
diff changeset
32 compact_arcs_level = 0
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 5
diff changeset
33 use_middle = false
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
34 orientation = inverted
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
35 overlay_previous = no
15
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 11
diff changeset
36 file_type = links