Mercurial > repos > iuc > pygenometracks

annotate macros.xml @ 15:c7af51147b55 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
author iuc
date Wed, 01 Oct 2025 19:34:28 +0000
parents d640aa8a24ab
children
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5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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1 <macros>
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c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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2 <token name="@TOOL_VERSION@">3.9</token>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <xml name="requirements">
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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5 <requirements>
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6 <requirement type="package" version="@TOOL_VERSION@">pygenometracks</requirement>
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7 <yield />
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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8 </requirements>
2
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9 <version_command><![CDATA[@BINARY@ --version | tail -n 1 ]]></version_command>
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5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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10 </xml>
15
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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11 <xml name="xrefs">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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12 <xrefs>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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13 <xref type="bio.tools">pygenometracks</xref>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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14 </xrefs>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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15 </xml>
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16 <xml name="citations">
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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17 <citations>
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18 <citation type="doi">10.1038/s41467-017-02525-w</citation>
42ac675e0c60 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
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19 <citation type="doi">10.1093/bioinformatics/btaa692</citation>
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20 <yield />
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21 </citations>
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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22 </xml>
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23 <token name="@REFERENCES@">
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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25 .. class:: infomark
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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27 For more information on the tools, please visit our `help site`_.
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29 If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com
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5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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31 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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32 Immunobiology and Epigenetics`_.
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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34 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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35 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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36 .. _help site: https://github.com/deeptools/pyGenomeTracks
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37
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38 </token>
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39 <!-- all input files-->
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40 <xml name="matrix_h5_cooler_multiple_macro">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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41 <param name="matrix_h5_cooler_multiple" type="data" format="h5,cool"
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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42 label="Matricies to plot" multiple="true"/>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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43 </xml>
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44 <xml name="track_input_bed_macro">
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45 <param name="track_input_bed" type="data" format="bed" label="Track file(s) bed format" multiple="True"/>
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5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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46 </xml>
4
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47 <xml name="track_input_narrow_peak_macro">
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48 <param name="track_input_narrow_peak" type="data" format="encodepeak,bed" label="Track file(s) encodepeak or bed format" multiple="True"/>
4
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49 </xml>
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50 <xml name="track_input_bed_single_macro">
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51 <param name="track_input_bed_single" type="data" format="bed" label="Track file bed format"/>
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52 </xml>
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53 <xml name="track_input_bedgraph_macro">
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54 <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file(s) bedgraph format" multiple="True"/>
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55 </xml>
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56 <xml name="track_input_bigwig_macro">
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57 <param name="track_input_bigwig" type="data" format="bigwig" label="Track file(s) bigwig format" multiple="True"/>
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58 </xml>
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59 <xml name="track_input_bedgraph_matrix_macro">
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60 <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file(s) bedgraph format" multiple="True"/>
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61 </xml>
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62 <xml name="track_input_link_macro">
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63 <param name="track_input_link" type="data" format="bed,interval" label="Track file(s) for links" multiple="True"/>
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64 </xml>
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65 <xml name="track_input_fasta_macro">
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66 <conditional name="fasta_source">
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67 <param name="fasta_source_selector" type="select" label="Choose the source for the fasta to display">
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68 <option value="cached">Locally cached</option>
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69 <option value="history">History</option>
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70 </param>
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71 <when value="cached">
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72 <param name="fasta_cached" type="select" label="Fasta availables">
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73 <options from_data_table="fasta_indexes">
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74 <validator type="no_options" message="No cached fasta is available"/>
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75 </options>
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76 </param>
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77 </when>
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78 <when value="history">
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79 <param name="fasta_local" type="data" format="fasta" label="Fasta from history"/>
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80 </when>
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81 </conditional>
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82 </xml>
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83 <xml name="track_input_maf_macro">
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84 <param name="track_input_maf" type="data" format="maf" label="Track file for maf" multiple="False"/>
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85 </xml>
7
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86 <!-- Common to nearly all tracks: -->
0
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87 <xml name="plot_title">
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88 <param name="title" type="text" optional="true" label="Plot title" multiple="True"/>
0
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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89 </xml>
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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90 <xml name="spacer_macro">
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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91 <param name="spacer_height" type="float" value="" optional="True"
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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92 label="Include spacer at the end of the track" help="Height of the spacer." />
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93 </xml>
2
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94 <xml name="inverted_macro">
5
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95 <param name="invert_orientation" type="boolean" truevalue="true" falsevalue="false" checked="false"
2
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96 label="Invert the track" />
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97 </xml>
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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98 <xml name="overlay_macro">
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99 <param name="overlay_select" type="select" label="Overlay this track with the previous one:">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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100 <option value="no" selected="True">No</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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101 <option value="yes">Yes</option>
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102 <option value="share-y">Yes and keep same y axis</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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103 </param>
2
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104 </xml>
7
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105 <xml name="minmax_macro">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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106 <param name="min_value" type="float" value="" optional="True" label="Minimum value"/>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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107 <param name="max_value" type="float" value="" optional="True" label="Maximum value"/>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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108 </xml>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
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109 <!-- More specific but still present twice:-->
2
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110 <xml name="color_coverage_macro">
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111 <param name="color" type="color" value="#000000" label="Color of track" optional="True" />
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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112 <param name="alpha" type="float" value="1" min="0" max="1" label="level of transparency (alpha)" help="1 is opaque and 0 is totally transparent"/>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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113 <conditional name="color_negative">
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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114 <param name="color_negative_select" type="select" label="Use a different color for negative values">
5
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115 <option value="false" selected="True">No</option>
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116 <option value="true">Yes</option>
2
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117 </param>
5
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118 <when value="false" />
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119 <when value="true">
2
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120 <param name="color" type="color" value="#000000" label="Color of negative values" optional="True" />
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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121 </when>
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122 </conditional>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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123 </xml>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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124 <xml name="type_coverage_macro">
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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125 <conditional name="type_conditional">
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126 <param name="type_selector" type="select" label="Choose style of the plot.">
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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127 <option value="fill_option">fill</option>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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128 <option value="line_option">line</option>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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129 <option value="point_option">point</option>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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130 </param>
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131 <when value="line_option">
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132 <param name="width_line" type="float" value="0.5" optional="True" label="Width"/>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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133 </when>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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134 <when value="point_option">
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135 <param name="width_point" type="float" value="0.5" optional="True" label="Width"/>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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136 </when>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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137 <when value="fill_option" />
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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138 </conditional>
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
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139 </xml>
8
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140 <xml name="logScale_coverage_macro">
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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141 <conditional name="logScale_conditional">
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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142 <param name="transform_selector" type="select" label="Choose a transformation">
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143 <option value="no">no transformation</option>
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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144 <option value="log1p">log1p</option>
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145 <option value="log">log</option>
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146 <option value="log2">log2</option>
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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147 <option value="log10">log10</option>
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148 <option value="-log">-log</option>
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149 </param>
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150 <when value="no"/>
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151 <when value="log1p">
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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152 <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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153 label="Use original values instead of transformed values." />
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154 </when>
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155 <when value="log">
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156 <param name="log_pseudocount" type="float" value="0" label="pseudo count to add before applying log" />
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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157 <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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158 label="Use original values instead of transformed values." />
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159 </when>
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160 <when value="log2">
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161 <param name="log_pseudocount" type="float" value="0" label="pseudo count to add before applying log2" />
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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162 <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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163 label="Use original values instead of transformed values." />
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164 </when>
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165 <when value="log10">
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166 <param name="log_pseudocount" type="float" value="0" label="pseudo count to add before applying log10" />
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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167 <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
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168 label="Use original values instead of transformed values." />
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169 </when>
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
170 <when value="-log">
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
171 <param name="log_pseudocount" type="float" value="0" label="pseudo count to add before applying -log" />
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
172 <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
173 label="Use original values instead of transformed values." />
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
174 </when>
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
175 </conditional>
345d24273a58 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
176 </xml>
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
177 <xml name="border_color_bed_macro">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
178 <conditional name="border_color_bed">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
179 <param name="border_color_bed_select" type="select" label="Define border color:">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
180 <option value="manually" selected="True">manually</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
181 <option value="bed_rgb">From the 9th field</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
182 <option value="none">No border</option>
2
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
iuc
parents: 0
diff changeset
183 </param>
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
184 <when value="manually">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
185 <param name="color" type="color" value="#000000" label="Color of the border"/>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
186 </when>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
187 <when value="bed_rgb" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
188 <when value="none" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
189 </conditional>
2
6aafcf02bd9a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 11b5b3cc8b846cc75623a3ef265afe8c68747f2e"
iuc
parents: 0
diff changeset
190 </xml>
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
191 <xml name="backbone_color_bed_macro">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
192 <conditional name="backbone_color_bed">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
193 <param name="backbone_color_bed_select" type="select" label="Define the color of the backbone:">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
194 <option value="manually" selected="True">manually</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
195 <option value="bed_rgb">From the 9th field</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
196 <option value="none">No border</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
197 </param>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
198 <when value="manually">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
199 <param name="color" type="color" value="#000000" label="Color of the backbone"/>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
200 </when>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
201 <when value="bed_rgb" />
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
202 <when value="none" />
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
203 </conditional>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
204 </xml>
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
205 <xml name="bed_advanced_macro">
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
206 <param name="global_max_row" type="boolean" truevalue="true" falsevalue="false" checked="false"
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
207 label="Global max rows" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
208 <param name="gene_rows" type="integer" value="" optional="True" label="Maximum number of gene rows" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
209 <param name="max_labels" type="integer" value="60" label="Maximum number of gene labels to display" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
210 <param name="line_width" type="float" value="0.5" label="width of lines" />
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
211 </xml>
15
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
212 <xml name="height_utr_macro">
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
213 <param name="height_utr" type="float" value="1" min="0" max="1" label="relative height of UTR regions compared to coding regions"/>
15
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
214 </xml>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
215 <xml name="color_utr_macro">
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
216 <conditional name="color_utr">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
217 <param name="color_utr_select" type="select" label="Define UTR color:">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
218 <option value="manually" selected="True">manually</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
219 <option value="bed_rgb">From the 9th field</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
220 <option value="like">Like the coding</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
221 </param>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
222 <when value="manually">
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
223 <param name="color" type="color" value="grey" label="Color of UTR regions"/>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
224 </when>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
225 <when value="bed_rgb" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
226 <when value="like" />
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
227 </conditional>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
228 </xml>
15
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
229 <xml name="bed_arrow_macro">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
230 <param name="arrow_interval" type="integer" value="2" min="0" label="interval between 2 arrows on exons"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
231 <conditional name="color_arrow">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
232 <param name="color_arrow_select" type="select" label="Define arrow color:">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
233 <option value="manually" selected="True">manually</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
234 <option value="bed_rgb">From the 9th field</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
235 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
236 <when value="manually">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
237 <param name="color" type="color" value="black" label="Color of arrows"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
238 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
239 <when value="bed_rgb" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
240 </conditional>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
241 </xml>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
242 <xml name="bed_style_macro">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
243 <conditional name="labels">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
244 <param name="plot_labels" type="select" label="Plot labels">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
245 <option value="true" selected="True">yes</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
246 <option value="false">no</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
247 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
248 <when value="true">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
249 <param name="all_labels_inside" type="boolean" truevalue="true" falsevalue="false" checked="false"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
250 label="Put all labels inside the plotted region"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
251 help="Put labels on the left of the region if the region ends after the plotted region."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
252 <param name="labels_in_margin" type="boolean" truevalue="true" falsevalue="false" checked="false"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
253 label="Allow to put labels in the right margin"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
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254 help="Put labels in the margin if the region ends after the plotted region."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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255 <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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256 <param name="fontstyle" type="select" label="Fontstyle">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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257 <option value="normal" selected="True">normal</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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258 <option value="italic">italic</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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259 <option value="oblique">oblique</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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260 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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261 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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262 <when value="false"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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263 </conditional>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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264 <conditional name="bed_style">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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265 <param name="bed_style_select" type="select" label="Bed style">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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266 <option value="flybase" selected="True">flybase (blocks with arrow at extremities)</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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267 <option value="UCSC">UCSC (blocks with arrows in introns)</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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268 <option value="tssarrow">tssarrow (blocks with arrow above at beginning)</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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269 <option value="exonarrows">exonarrows (large blocks with arrows in exons and smaller blocks for introns)</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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270 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
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271 <when value="flybase">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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272 <expand macro="border_color_bed_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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273 <param name="arrowhead_included" type="boolean" truevalue="true" falsevalue="false" checked="false"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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274 label="Include the arrowhead in the bed interval:"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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275 help="When set to False, the arrow indicating the orientation of the interval is plotted outside of the interval."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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276 <param name="arrowhead_fraction" type="float" value="0.004" min="0" max="1"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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277 label="Size of arrowhead relative to the plotted region"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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278 help="This size is also used to put space between the bed regions and their labels."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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279 <section name="bed_advanced" title="Configure other bed parameters" expanded="False">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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280 <expand macro="height_utr_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
281 <expand macro="color_utr_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
282 <expand macro="bed_advanced_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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283 <expand macro="backbone_color_bed_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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284 </section>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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285 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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286 <when value="UCSC">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
287 <expand macro="border_color_bed_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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288 <section name="bed_advanced" title="Configure other bed parameters" expanded="False">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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289 <param name="arrowhead_fraction" type="float" value="0.004" min="0" max="1"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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290 label="Size of arrowhead relative to the plotted region"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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291 help="This size is also used to put space between the bed regions and their labels."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
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292 <expand macro="bed_arrow_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
293 <expand macro="bed_advanced_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
294 <expand macro="backbone_color_bed_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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295 </section>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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296 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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297 <when value="tssarrow">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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298 <section name="bed_advanced" title="Configure other bed parameters" expanded="False">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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299 <param name="arrow_length" type="integer" optional="true" label="arrow length" help="the length of the arrow in bp (default is 4% of the plotted region)"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
300 <expand macro="height_utr_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
301 <expand macro="color_utr_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
parents: 14
diff changeset
302 <expand macro="bed_advanced_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
303 <param name="arrowhead_fraction" type="float" value="0.004" min="0" max="1"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
304 label="Size of arrowhead relative to the plotted region"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
305 help="This size is also used to put space between the bed regions and their labels."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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306 </section>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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307 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
308 <when value="exonarrows">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
309 <expand macro="border_color_bed_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
310 <section name="bed_advanced" title="Configure other bed parameters" expanded="False">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
311 <expand macro="bed_arrow_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
312 <param name="height_intron" type="float" value="0.5" min="0" max="1" label="relative height of introns compared to exons"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
313 <expand macro="color_utr_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
314 <expand macro="bed_advanced_macro" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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parents: 14
diff changeset
315 <param name="arrowhead_fraction" type="float" value="0.004" min="0" max="1"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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316 label="Size of arrowhead relative to the plotted region"
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
317 help="This size is also used to put space between the bed regions and their labels."/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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318 </section>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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319 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
320 </conditional>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
321 </xml>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
322 <xml name="delinv_labels">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
323 <conditional name="labels">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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324 <param name="plot_labels" type="select" label="Plot labels below">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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325 <option value="true" selected="True">yes</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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326 <option value="false">no</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
327 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
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diff changeset
328 <when value="true">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
329 <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
330 <param name="fontstyle" type="select" label="Fontstyle">
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
331 <option value="normal" selected="True">normal</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
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diff changeset
332 <option value="italic">italic</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
iuc
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diff changeset
333 <option value="oblique">oblique</option>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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334 </param>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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335 </when>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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diff changeset
336 <when value="false"/>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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337 </conditional>
c7af51147b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9fdf4ad9c2a9c026720e2b01460b7ac85056b068
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338 </xml>
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
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diff changeset
339 <xml name="lines_macro">
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
340 <param name="alpha" type="float" value="1" min="0" max="1" label="level of transparency (alpha)" help="1 is opaque and 0 is totally transparent"/>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
341 <param name="line_width" type="float" value="0.5" label="width of line(s)" optional="True"/>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
342 <param name="line_style" type="select" label="Style of the line(s)">
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
343 <option value="solid" selected="True">Solid</option>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
344 <option value="dashed">Dashed</option>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
345 <option value="dotted">Dotted</option>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
346 <option value="dashdot">Dashdot</option>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
347 </param>
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
348 </xml>
10
5f9a41f84844 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 5bd033a726b088eef3cf591da36ca1e9ba70d8c7"
iuc
parents: 9
diff changeset
349 <xml name="colormap_macro_noRdYlBu_r_noViridis">
7
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
350 <option value="RdYlBu">RdYlBu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
351 <option value="Accent">Accent</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
352 <option value="Spectral">Spectral</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
353 <option value="Set1">Set1</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
354 <option value="Set2">Set2</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
355 <option value="Set3">Set3</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
356 <option value="Dark2">Dark2</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
357 <option value="Reds">Reds</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
358 <option value="Oranges">Oranges</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
359 <option value="Greens">Greens</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
360 <option value="Blues">Blues</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
361 <option value="Greys">Greys</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
362 <option value="Purples">Purples</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
363 <option value="Paired">Paired</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
364 <option value="Pastel1">Pastel1</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
365 <option value="Pastel2">Pastel2</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
366 <option value="spring">spring</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
367 <option value="summer">summer</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
368 <option value="autumn">autumn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
369 <option value="winter">winter</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
370 <option value="hot">hot</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
371 <option value="coolwarm">coolwarm</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
372 <option value="cool">cool</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
373 <option value="seismic">seismic</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
374 <option value="terrain">terrain</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
375 <option value="ocean">ocean</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
376 <option value="rainbow">rainbow</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
377 <option value="bone">bone</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
378 <option value="flag">flag</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
379 <option value="prism">prism</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
380 <option value="cubehelix">cubehelix</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
381 <option value="binary">binary</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
382 <option value="pink">pink</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
383 <option value="gray">gray</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
384 <option value="copper">copper</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
385 <option value="BrBG">BrBG</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
386 <option value="BuGn">BuGn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
387 <option value="BuPu">BuPu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
388 <option value="GnBu">GnBu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
389 <option value="OrRd">OrRd</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
390 <option value="PiYG">PiYG</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
391 <option value="PRGn">PRGn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
392 <option value="PuOr">PuOr</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
393 <option value="PuRd">PuRd</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
394 <option value="PuBu">PuBu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
395 <option value="RdBu">RdBu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
396 <option value="RdGy">RdGy</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
397 <option value="RdPu">RdPu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
398 <option value="YlGn">YlGn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
399 <option value="PuBuGn">PuBuGn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
400 <option value="RdYlGn">RdYlGn</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
401 <option value="YlGnBu">YlGnBu</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
402 <option value="YlOrBr">YlOrBr</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
403 <option value="YlOrRd">YlOrRd</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
404 <option value="gist_gray">gist_gray</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
405 <option value="gist_stern">gist_stern</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
406 <option value="gist_earth">gist_earth</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
407 <option value="gist_yarg">gist_yarg</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
408 <option value="gist_ncar">gist_ncar</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
409 <option value="gist_rainbow">gist_rainbow</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
410 <option value="gist_heat">gist_heat</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
411 <option value="gnuplot">gnuplot</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
412 <option value="gnuplot2">gnuplot2</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
413 <option value="CMRmap">CMRmap</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
414 <option value="bwr">bwr</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
415 <option value="hsv">hsv</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
416 <option value="brg">brg</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
417 <option value="jet">jet</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
418 <option value="afmhot">afmhot</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
419 <option value="plasma">plasma</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
420 <option value="inferno">inferno</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
421 <option value="magma">magma</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
422 <option value="cividis">cividis</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
423 <option value="Accent_r">Accent reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
424 <option value="Spectral_r">Spectral reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
425 <option value="Set1_r">Set1 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
426 <option value="Set2_r">Set2 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
427 <option value="Set3_r">Set3 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
428 <option value="Dark2_r">Dark2 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
429 <option value="Reds_r">Reds reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
430 <option value="Oranges_r">Oranges reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
431 <option value="Greens_r">Greens reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
432 <option value="Blues_r">Blues reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
433 <option value="Greys_r">Greys reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
434 <option value="Purples_r">Purples reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
435 <option value="Paired_r">Paired reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
436 <option value="Pastel1_r">Pastel1 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
437 <option value="Pastel2_r">Pastel2 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
438 <option value="spring_r">spring reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
439 <option value="summer_r">summer reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
440 <option value="autumn_r">autumn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
441 <option value="winter_r">winter reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
442 <option value="hot_r">hot reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
443 <option value="coolwarm_r">coolwarm reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
444 <option value="cool_r">cool reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
445 <option value="seismic_r">seismic reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
446 <option value="terrain_r">terrain reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
447 <option value="ocean_r">ocean reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
448 <option value="rainbow_r">rainbow reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
449 <option value="bone_r">bone reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
450 <option value="flag_r">flag reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
451 <option value="prism_r">prism reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
452 <option value="cubehelix_r">cubehelix reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
453 <option value="binary_r">binary reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
454 <option value="pink_r">pink reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
455 <option value="gray_r">gray reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
456 <option value="copper_r">copper reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
457 <option value="BrBG_r">BrBG reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
458 <option value="BuGn_r">BuGn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
459 <option value="BuPu_r">BuPu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
460 <option value="GnBu_r">GnBu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
461 <option value="OrRd_r">OrRd reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
462 <option value="PiYG_r">PiYG reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
463 <option value="PRGn_r">PRGn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
464 <option value="PuOr_r">PuOr reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
465 <option value="PuRd_r">PuRd reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
466 <option value="PuBu_r">PuBu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
467 <option value="RdBu_r">RdBu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
468 <option value="RdGy_r">RdGy reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
469 <option value="RdPu_r">RdPu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
470 <option value="YlGn_r">YlGn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
471 <option value="PuBuGn_r">PuBuGn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
472 <option value="RdYlGn_r">RdYlGn reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
473 <option value="YlGnBu_r">YlGnBu reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
474 <option value="YlOrBr_r">YlOrBr reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
475 <option value="YlOrRd_r">YlOrRd reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
476 <option value="gist_gray_r">gist_gray reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
477 <option value="gist_stern_r">gist_stern reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
478 <option value="gist_earth_r">gist_earth reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
479 <option value="gist_yarg_r">gist_yarg reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
480 <option value="gist_ncar_r">gist_ncar reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
481 <option value="gist_rainbow_r">gist_rainbow reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
482 <option value="gist_heat_r">gist_heat reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
483 <option value="gnuplot_r">gnuplot reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
484 <option value="gnuplot2_r">gnuplot2 reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
485 <option value="CMRmap_r">CMRmap reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
486 <option value="bwr_r">bwr reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
487 <option value="hsv_r">hsv reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
488 <option value="brg_r">brg reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
489 <option value="jet_r">jet reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
490 <option value="afmhot_r">afmhot reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
491 <option value="viridis_r">viridis reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
492 <option value="plasma_r">plasma reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
493 <option value="inferno_r">inferno reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
494 <option value="magma_r">magma reversed</option>
d691445a7d2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
iuc
parents: 5
diff changeset
495 <option value="cividis_r">cividis reversed</option>
5
0082bb149d37 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents: 4
diff changeset
496 </xml>
11
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
497 <xml name="links_arcs_triangles_options">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
498 <param name="compact_arcs_level" type="select" label="Height of arcs and triangles:">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
diff changeset
499 <option value="0" selected="True">default (proportional to distance)</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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500 <option value="1">compacted (the height is proportional to the square root of the distance)</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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501 <option value="2">highly compacted (the height is the same for all distances)</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
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502 </param>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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503 <param name="use_middle" type="select" label="Coordinates to use" help="Not useful with loops">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
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504 <option value="false" selected="True">Extremities (start of first and end of second)</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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505 <option value="true">Center (mean of start and end for each)</option>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
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506 </param>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
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507 </xml>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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508 <xml name="region2_option">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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509 <param name="region2" type="text" label="Region of the genome that should be plotted on the y axis" optional="true"
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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510 value="" help="The format is chr:start-end, for example chr10:10-500. By default this is the region on the x-axis. Top is start and bottom is end. Use 'Invert the track' if you want the contrary.">
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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511 <validator type="expression" message="Region should be like chr10:10-500">'^[a-zA-Z0-9_]:\d+-\d+$'</validator>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
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parents: 10
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512 </param>
2f09a07c94ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 10
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513 </xml>
0
5141268dba30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
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514 </macros>