Mercurial > repos > iuc > pycoqc

comparison pycoqc.xml @ 2:d65cec95072e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pycoqc commit 6bada3b3ee8791dd7fc2689f8a6023313cb4a0c4
author iuc
date Mon, 25 Sep 2023 08:28:59 +0000
parents a6f21ef054b3
children
comparison
equal deleted inserted replaced
1:a6f21ef054b3 2:d65cec95072e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="pycoqc" name="Pycoqc" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> 2 <tool id="pycoqc" name="Pycoqc" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description></description> 3 <description>
4 quality control for Nanopore sequencing data
5 </description>
4 <macros> 6 <macros>
5 <import>macros.xml</import> 7 <import>macros.xml</import>
6 </macros> 8 </macros>
7 <expand macro="requirements"/> 9 <expand macro="requirements"/>
8 10
18 #if $filter_duplicated: 20 #if $filter_duplicated:
19 '$filter_duplicated' 21 '$filter_duplicated'
20 #end if 22 #end if
21 --min_barcode_percent '$min_barcode_percent' 23 --min_barcode_percent '$min_barcode_percent'
22 --report_title '$report_title' 24 --report_title '$report_title'
23 ## TODO in future - --template_file 25 ## can be implemented in future - --template_file
24 ## TODO in future - --config_file 26 ## can be implemented in future - --config_file
25 #if $skip_coverage_plot 27 #if $skip_coverage_plot
26 '$skip_coverage_plot' 28 '$skip_coverage_plot'
27 #end if 29 #end if
28 --sample '$sample' 30 --sample '$sample'
29 ## TODO in future --default_config 31 ## can be implemented in future --default_config
30 --summary_file '$summary_file' 32 --summary_file '$summary_file'
31 ## TODO in future --barcode_file 33 ## can be implemented in future --barcode_file
32 #if $bam_file: 34 #if $bam_file:
33 --bam_file '$bam_file' 35 --bam_file '$bam_file'
34 #end if 36 #end if
35 --html_outfile '$out_html' 37 --html_outfile '$out_html'
36 #if $out_json: 38 #if $out_json: