Mercurial > repos > iuc > pureclip
diff pureclip.xml @ 2:0c87195035ee draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pureclip commit c4a054d38cb9fe724612ba666f5a6d3e3ef49e75
| author | iuc |
|---|---|
| date | Thu, 21 Jul 2022 19:17:16 +0000 |
| parents | 446f97577a12 |
| children |
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--- a/pureclip.xml Tue May 29 19:07:24 2018 -0400 +++ b/pureclip.xml Thu Jul 21 19:17:16 2022 +0000 @@ -1,7 +1,11 @@ -<tool id="pureclip" name="PureCLIP" version="1.0.4"> +<tool id="pureclip" name="PureCLIP" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.01"> <description>- HMM based peak caller designed for eCLIP/iCLIP data</description> + <macros> + <token name="@TOOL_VERSION@">1.0.4</token> + <token name="@VERSION_SUFFIX@">1</token> + </macros> <requirements> - <requirement type="package" version="1.0.4">pureclip</requirement> + <requirement type="package" version="@TOOL_VERSION@">pureclip</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ ln -s '${target_bam_file}' target.bam && @@ -263,9 +267,9 @@ <param name="cl_motif_bed_file" value="fimo_clmotif_occurences.chrM:4000-8300.bed" ftype="bed"/> <param name="max_motif_id" value="4"/> <param name="crosslink_bed_stats" value="True"/> - <output name="crosslink_bed_outfile" file="chrM:4000-8300.crosslink_sites.cov_CLmotifs.bed"/> - <output name="binding_region_bed_outfile" file="chrM:4000-8300.binding_regions.cov_CLmotifs.bed"/> - <output name="crosslink_bed_stats" file="chrM:4000-8300.crosslink_sites.cov_CLmotifs.bed.stats"/> + <output name="crosslink_bed_outfile" file="chrM:4000-8300.crosslink_sites.cov_CLmotifs.bed" compare="re_match"/> + <output name="binding_region_bed_outfile" file="chrM:4000-8300.binding_regions.cov_CLmotifs.bed" compare="re_match"/> + <output name="crosslink_bed_stats" file="chrM:4000-8300.crosslink_sites.cov_CLmotifs.bed.stats" compare="re_match"/> </test> <test> <param name="target_bam_file" value="aligned.prepro.R2.chrM:4000-8300.bam" ftype="bam"/>