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comparison pretext_snapshot.xml @ 6:046f51d5f701 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pretext commit f58b497b52f86a3d1c2c5eedbdf684145d43f1e8
author iuc
date Fri, 07 Nov 2025 16:39:39 +0000
parents ec1336a26fa1
children
comparison
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5:d83252caf5f1 6:046f51d5f701
1 <tool id="pretext_snapshot" name="Pretext Snapshot" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="pretext_snapshot" name="Pretext Snapshot" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description>image generator for Pretext contact maps</description> 2 <description>image generator for Pretext contact maps</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.0.4</token> 4 <token name="@TOOL_VERSION@">0.0.5</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">pretextsnapshot</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">pretextsnapshot</requirement>
9 <requirement type="package" version="1.601">rename</requirement> 9 <requirement type="package" version="1.601">rename</requirement>
10 </requirements> 10 </requirements>
87 <tests> 87 <tests>
88 <test expect_num_outputs="1"> 88 <test expect_num_outputs="1">
89 <param name="input" value="map.pretext"/> 89 <param name="input" value="map.pretext"/>
90 <conditional name="formats"> 90 <conditional name="formats">
91 <param name="outformat" value="jpeg"/> 91 <param name="outformat" value="jpeg"/>
92 <param name="jpegquality" value="80"/> 92 <param name="jpegQuality" value="80"/>
93 </conditional> 93 </conditional>
94 <param name="resolution" value="900"/> 94 <param name="resolution" value="900"/>
95 <param name="colormap" value="1"/> 95 <param name="colormap" value="1"/>
96 <param name="sequences" value="=full, =all"/> 96 <param name="sequences" value="=full, =all"/>
97 <param name="mintexels" value="30"/> 97 <param name="mintexels" value="30"/>
98 <conditional name="grid"> 98 <conditional name="grid">
99 <param name="showGrid" value="yes"/> 99 <param name="showGrid" value="yes"/>
100 <param name="gridsize" value="2"/> 100 <param name="gridsize" value="2"/>
101 <param name="gridcolor" value="red"/> 101 <param name="gridcolor" value="red"/>
102 </conditional> 102 </conditional>
103 <param name="sequencenames" value="--printSequenceNames"/> 103 <param name="sequencenames" value="True"/>
104 <output_collection name="pretext_snap_out" count="4"> 104 <output_collection name="pretext_snap_out" count="4">
105 <element name="pretext_snapshotFullMap" ftype="jpg" file="fullmap1.jpg"/> 105 <element name="pretext_snapshotFullMap" ftype="jpg" file="fullmap1.jpg"/>
106 <element name="pretext_snapshotref_0" ftype="jpg" file="snapshot1.jpg"/> 106 <element name="pretext_snapshotref_0" ftype="jpg" file="snapshot1.jpg"/>
107 <element name="pretext_snapshotref_1" ftype="jpg" file="snapshot2.jpg"/> 107 <element name="pretext_snapshotref_1" ftype="jpg" file="snapshot2.jpg"/>
108 <element name="pretext_snapshotref_2" ftype="jpg" file="snapshot3.jpg"/> 108 <element name="pretext_snapshotref_2" ftype="jpg" file="snapshot3.jpg"/>
109 </output_collection> 109 </output_collection>
110 </test> 110 </test>
111 <test expect_num_outputs="1"> 111 <test expect_num_outputs="1">
112 <param name="input" value="map.pretext"/> 112 <param name="input" value="map.pretext"/>
113 <param name="sequencenames" value="True"/>
113 <conditional name="formats"> 114 <conditional name="formats">
114 <param name="outformat" value="bmp"/> 115 <param name="outformat" value="bmp"/>
115 </conditional> 116 </conditional>
116 <param name="resolution" value="700"/> 117 <param name="resolution" value="700"/>
117 <param name="colormap" value="5"/> 118 <param name="colormap" value="5"/>
118 <param name="sequences" value="=full"/> 119 <param name="sequences" value="=full"/>
119 <param name="mintexels" value="60"/> 120 <param name="mintexels" value="60"/>
120 <output_collection name="pretext_snap_out" count="1"> 121 <output_collection name="pretext_snap_out" count="1">
121 <element name="pretext_snapshotFullMap" ftype="bmp" file="fullmap2.bmp"/> 122 <element name="pretext_snapshotFullMap" ftype="bmp">
123 <assert_contents>
124 <has_size value="1470054" delta="1000"/>
125 </assert_contents>
126 </element>
122 </output_collection> 127 </output_collection>
123 </test> 128 </test>
124 </tests> 129 </tests>
125 <help><![CDATA[ 130 <help><![CDATA[
126 **Color map:** 131 **Color map:**