# HG changeset patch
# User iuc
# Date 1730106931 0
# Node ID b070f46b218c0d4036399e9fd24a7b6ef6473fbc
# Parent  1ae5b58fe3e6fa153e986551ad474a507fb471c0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext commit e387e8541eb3e9c5ce56440f955a3b6f2aa27d08

diff -r 1ae5b58fe3e6 -r b070f46b218c pretext_map.xml
--- a/pretext_map.xml	Fri Feb 04 21:22:56 2022 +0000
+++ b/pretext_map.xml	Mon Oct 28 09:15:31 2024 +0000
@@ -2,7 +2,7 @@
     <description>converts SAM or BAM files into genome contact maps</description>
     <macros>
         <token name="@TOOL_VERSION@">0.1.9</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
@@ -23,7 +23,7 @@
             --sortby name
             --sortorder $sorting.sortorder
         #end if
-        #if $map_qual:
+        #if str($map_qual):
             --mapq $map_qual
         #end if
         #if $filter.filter_type == "in":
diff -r 1ae5b58fe3e6 -r b070f46b218c test-data/input_graph.bgr
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_graph.bgr	Mon Oct 28 09:15:31 2024 +0000
@@ -0,0 +1,2 @@
+chr2	89999	989999	220
+chr3	74999	974999	330
diff -r 1ae5b58fe3e6 -r b070f46b218c test-data/input_graph.bw
Binary file test-data/input_graph.bw has changed
diff -r 1ae5b58fe3e6 -r b070f46b218c test-data/input_graph.pretext
Binary file test-data/input_graph.pretext has changed
diff -r 1ae5b58fe3e6 -r b070f46b218c test-data/output_4.pretext
Binary file test-data/output_4.pretext has changed
diff -r 1ae5b58fe3e6 -r b070f46b218c test-data/output_5.pretext
Binary file test-data/output_5.pretext has changed