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comparison pretext_map.xml @ 7:b070f46b218c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext commit e387e8541eb3e9c5ce56440f955a3b6f2aa27d08
author iuc
date Mon, 28 Oct 2024 09:15:31 +0000
parents 1ae5b58fe3e6
children
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6:1ae5b58fe3e6 7:b070f46b218c
1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description>converts SAM or BAM files into genome contact maps</description> 2 <description>converts SAM or BAM files into genome contact maps</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.1.9</token> 4 <token name="@TOOL_VERSION@">0.1.9</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
9 <requirement type="package" version="1.14">samtools</requirement> 9 <requirement type="package" version="1.14">samtools</requirement>
10 </requirements> 10 </requirements>
21 --sortorder $sorting.sortorder 21 --sortorder $sorting.sortorder
22 #elif $sorting.sortby == "name": 22 #elif $sorting.sortby == "name":
23 --sortby name 23 --sortby name
24 --sortorder $sorting.sortorder 24 --sortorder $sorting.sortorder
25 #end if 25 #end if
26 #if $map_qual: 26 #if str($map_qual):
27 --mapq $map_qual 27 --mapq $map_qual
28 #end if 28 #end if
29 #if $filter.filter_type == "in": 29 #if $filter.filter_type == "in":
30 --filterInclude '$filter.filter_list' 30 --filterInclude '$filter.filter_list'
31 #elif $filter.filter_type == "out": 31 #elif $filter.filter_type == "out":