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comparison pretext_map.xml @ 1:9781c90fb254 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext commit 663ac3c3df3458f3bd5f1c9d49b3ebf9cd97f52c"
author iuc
date Thu, 20 May 2021 07:56:37 +0000
parents f59b273119f7
children 47a13c1848c6
comparison
equal deleted inserted replaced
0:f59b273119f7 1:9781c90fb254
1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">0.1.5</token> 3 <token name="@TOOL_VERSION@">0.1.6</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
8 <requirement type="package" version="1.12">samtools</requirement> 8 <requirement type="package" version="1.12">samtools</requirement>
61 <option value="in">Filter to include only specified sequence names</option> 61 <option value="in">Filter to include only specified sequence names</option>
62 <option value="out">Filter to exclude specified sequence names</option> 62 <option value="out">Filter to exclude specified sequence names</option>
63 </param> 63 </param>
64 <when value=""/> 64 <when value=""/>
65 <when value="in"> 65 <when value="in">
66 <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1, seq_2"> 66 <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1,seq_2">
67 <sanitizer> 67 <sanitizer>
68 <valid initial="string.ascii_letters,string.digits"> 68 <valid initial="string.ascii_letters,string.digits">
69 <add value="_"/> 69 <add value="_"/>
70 <add value=","/>
70 </valid> 71 </valid>
71 </sanitizer> 72 </sanitizer>
72 </param> 73 </param>
73 </when> 74 </when>
74 <when value="out"> 75 <when value="out">
75 <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1, seq_2"> 76 <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1,seq_2">
76 <sanitizer> 77 <sanitizer>
77 <valid initial="string.ascii_letters,string.digits"> 78 <valid initial="string.ascii_letters,string.digits">
78 <add value="_"/> 79 <add value="_"/>
80 <add value=","/>
79 </valid> 81 </valid>
80 </sanitizer> 82 </sanitizer>
81 </param> 83 </param>
82 </when> 84 </when>
83 </conditional> 85 </conditional>
105 <param name="sortby" value="name"/> 107 <param name="sortby" value="name"/>
106 <param name="sortorder" value="descend"/> 108 <param name="sortorder" value="descend"/>
107 </conditional> 109 </conditional>
108 <conditional name="filter"> 110 <conditional name="filter">
109 <param name="filter_type" value="out"/> 111 <param name="filter_type" value="out"/>
110 <param name="filter_list" value="chrM, chr8, chr9"/> 112 <param name="filter_list" value="chrM,chr8,chr9"/>
111 </conditional> 113 </conditional>
112 <output name="pretext_map_out" file="output_2.pretext"/> 114 <output name="pretext_map_out" file="output_2.pretext"/>
113 </test> 115 </test>
114 </tests> 116 </tests>
115 <help><![CDATA[ 117 <help><![CDATA[