Mercurial > repos > iuc > presto_collapseseq

comparison presto_collapseseq.xml @ 5:25915f2494d9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 09:01:22 +0000
parents e4ef56ac9b82
children
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4:e4ef56ac9b82 5:25915f2494d9
1 <tool id="presto_collapseseq" name="pRESTO CollapseSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="presto_collapseseq" name="pRESTO CollapseSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Remove/collapse duplicate sequences</description> 2 <description>Remove/collapse duplicate sequences</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>presto_macros.xml</import> 4 <import>presto_macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 7
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 9
10 <version_command>CollapseSeq.py --version</version_command> 10 <version_command>CollapseSeq.py --version</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
68 <data name="fastq_out" format="fastq" from_work_dir="tmp_collapse-unique.fastq"/> 68 <data name="fastq_out" format="fastq" from_work_dir="tmp_collapse-unique.fastq"/>
69 <expand macro="presto-log-output"/> 69 <expand macro="presto-log-output"/>
70 </outputs> 70 </outputs>
71 71
72 <tests> 72 <tests>
73 <test> 73 <test expect_num_outputs="1">
74 <param name="fastq_in" value="presto_collapseseq_test_in.fastq"/> 74 <param name="fastq_in" value="presto_collapseseq_test_in.fastq"/>
75 <param name="n" value="0"/> 75 <param name="n" value="0"/>
76 <param name="uf" value="PRCONS CREGION"/> 76 <param name="uf" value="PRCONS CREGION"/>
77 <param name="cf" value="CONSCOUNT"/> 77 <param name="cf" value="CONSCOUNT"/>
78 <param name="act" value="sum"/> 78 <param name="act" value="sum"/>