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comparison presto_alignsets.xml @ 5:1afd7d9caaa4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 08:58:34 +0000
parents 806e1c5eea74
children
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4:806e1c5eea74 5:1afd7d9caaa4
1 <tool id="presto_alignsets" name="pRESTO AlignSets" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="presto_alignsets" name="pRESTO AlignSets" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Multiple-align sequences with the same barcodes.</description> 2 <description>Multiple-align sequences with the same barcodes.</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>presto_macros.xml</import> 4 <import>presto_macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 7
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 9
10 <version_command>AlignSets.py --version</version_command> 10 <version_command>AlignSets.py --version</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
32 <data name="fastq_out" format="fastq" from_work_dir="tmp_align-pass.fastq"/> 32 <data name="fastq_out" format="fastq" from_work_dir="tmp_align-pass.fastq"/>
33 <expand macro="presto-log-output"/> 33 <expand macro="presto-log-output"/>
34 </outputs> 34 </outputs>
35 35
36 <tests> 36 <tests>
37 <test> 37 <test expect_num_outputs="2">
38 <param name="fastq_in" value="presto_alignsets_test_in.fastq"/> 38 <param name="fastq_in" value="presto_alignsets_test_in.fastq"/>
39 <param name="capture_log" value="true"/>
39 <output name="fastq_out" file="presto_alignsets_test_out.fastq" compare="sim_size" delta="15"/> 40 <output name="fastq_out" file="presto_alignsets_test_out.fastq" compare="sim_size" delta="15"/>
41 <output name="log_out">
42 <assert_contents>
43 <has_text text="SEQCOUNT"/>
44 </assert_contents>
45 </output>
40 </test> 46 </test>
41 </tests> 47 </tests>
42 48
43 <help><![CDATA[ 49 <help><![CDATA[
44 Multiple aligns sequences with the same barcode to correct for any misalignments due to either different primer usage or insertions/deletions in the sequences. 50 Multiple aligns sequences with the same barcode to correct for any misalignments due to either different primer usage or insertions/deletions in the sequences.