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comparison poretools_yield_plot.xml @ 3:2dc2270d105b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:42:07 +0000
parents d4bbe0275728
children
comparison
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2:d4bbe0275728 3:2dc2270d105b
1 <?xml version="1.0"?> 1 <tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1" profile="@PROFILE@">
2 <tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1">
3 <description>of sequencing yield over time</description> 2 <description>of sequencing yield over time</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 7 <expand macro="requirements"/>
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 @MPLBACKEND@ 10 @MPLBACKEND@
12 poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type 11 poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type
17 && mv plot.$extension '$output' 16 && mv plot.$extension '$output'
18 ]]> 17 ]]>
19 </command> 18 </command>
20 <inputs> 19 <inputs>
21 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> 20 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
22 <param name="plot_type" argument="--plot-type" type="select" label="Plot reads or base pairs"> 21 <param argument="--plot-type" type="select" label="Plot reads or base pairs">
23 <option value="reads">Reads</option> 22 <option value="reads">Reads</option>
24 <option value="basepairs">Base pairs</option> 23 <option value="basepairs">Base pairs</option>
25 </param> 24 </param>
26 <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." /> 25 <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." />
27 <expand macro="plot_options" /> 26 <expand macro="plot_options" />