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comparison poretools_winner.xml @ 3:0241e7340b75 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:44:03 +0000
parents 784e68a62543
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2:784e68a62543 3:0241e7340b75
1 <?xml version="1.0"?> 1 <tool id="poretools_winner" name="Get longest read" version="@VERSION@.0" profile="@PROFILE@">
2 <tool id="poretools_winner" name="Get longest read" version="@VERSION@.0">
3 <description>from a set of FAST5 files.</description> 2 <description>from a set of FAST5 files.</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 poretools winner --type $type '$input' > '$output' 10 poretools winner --type $type '$input' > '$output'
12 ]]> 11 ]]>
19 <data name="output" format="tabular" /> 18 <data name="output" format="tabular" />
20 </outputs> 19 </outputs>
21 <tests> 20 <tests>
22 <test> 21 <test>
23 <expand macro="test_input" /> 22 <expand macro="test_input" />
24 <param name="types" value="fwd" /> 23 <param name="type" value="fwd" />
25 <output name="output" file="poretools-winner-out1.tabular" ftype="tabular" /> 24 <output name="output" file="poretools-winner-out1.tabular" ftype="tabular" />
26 </test> 25 </test>
27 <test> 26 <test>
28 <expand macro="test_input" /> 27 <expand macro="test_input" />
29 <param name="types" value="rev" /> 28 <param name="type" value="rev" />
30 <output name="output" file="poretools-winner-out2.tabular" ftype="tabular" /> 29 <output name="output" file="poretools-winner-out2.tabular" ftype="tabular" />
31 </test> 30 </test>
32 <test> 31 <test>
33 <expand macro="test_input" /> 32 <expand macro="test_input" />
34 <param name="types" value="2D" /> 33 <param name="type" value="2D" />
35 <output name="output" file="poretools-winner-out3.tabular" ftype="tabular" /> 34 <output name="output" file="poretools-winner-out3.tabular" ftype="tabular" />
36 </test> 35 </test>
37 <test> 36 <test>
38 <expand macro="test_input" /> 37 <expand macro="test_input" />
39 <param name="types" value="best" /> 38 <param name="type" value="best" />
40 <output name="output" file="poretools-winner-out4.tabular" ftype="tabular" /> 39 <output name="output" file="poretools-winner-out4.tabular" ftype="tabular" />
41 </test> 40 </test>
42 </tests> 41 </tests>
43 <help> 42 <help>
44 Report the longest read among a set of FAST5 files. 43 Report the longest read among a set of FAST5 files.