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comparison poretools_winner.xml @ 0:8f35c19aca17 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:18:56 -0500
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children 784e68a62543
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-1:000000000000 0:8f35c19aca17
1 <?xml version="1.0"?>
2 <tool id="poretools_winner" name="Get longest read" version="@VERSION@.0">
3 <description>from a set of FAST5 files.</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements" />
8 <command detect_errors="aggressive">
9 <![CDATA[
10 poretools winner --type $type '$input' > '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
15 <expand macro="stat_options" />
16 </inputs>
17 <outputs>
18 <data name="output" format="tabular" />
19 </outputs>
20 <tests>
21 <test>
22 <expand macro="test_input" />
23 <param name="types" value="fwd" />
24 <output name="output" file="poretools-winner-out1.tabular" ftype="tabular" />
25 </test>
26 <test>
27 <expand macro="test_input" />
28 <param name="types" value="rev" />
29 <output name="output" file="poretools-winner-out2.tabular" ftype="tabular" />
30 </test>
31 <test>
32 <expand macro="test_input" />
33 <param name="types" value="2D" />
34 <output name="output" file="poretools-winner-out3.tabular" ftype="tabular" />
35 </test>
36 <test>
37 <expand macro="test_input" />
38 <param name="types" value="best" />
39 <output name="output" file="poretools-winner-out4.tabular" ftype="tabular" />
40 </test>
41 </tests>
42 <help>
43 Report the longest read among a set of FAST5 files.
44 </help>
45 <expand macro="citations" />
46 </tool>