Mercurial > repos > iuc > poretools_tabular

comparison poretools_tabular.xml @ 3:028f1172c434 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:43:02 +0000
parents d5e08d639ab4
children
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2:d5e08d639ab4 3:028f1172c434
1 <?xml version="1.0"?> 1 <tool id="poretools_tabular" name="Extract FASTQ" version="@VERSION@.0" profile="@PROFILE@">
2 <tool id="poretools_tabular" name="Extract FASTQ" version="@VERSION@.0">
3 <description>in tabular format from a set of FAST5 files</description> 2 <description>in tabular format from a set of FAST5 files</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 poretools tabular --type $type '$input' > '$output' 10 poretools tabular --type $type '$input' > '$output'
12 ]]> 11 ]]>
19 <data name="output" format="tabular" /> 18 <data name="output" format="tabular" />
20 </outputs> 19 </outputs>
21 <tests> 20 <tests>
22 <test> 21 <test>
23 <expand macro="test_input" /> 22 <expand macro="test_input" />
24 <param name="types" value="fwd" /> 23 <param name="type" value="fwd" />
25 <param name="detailed" value="true" />
26 <output name="output" file="poretools-tabular-out1.tabular" ftype="tabular" /> 24 <output name="output" file="poretools-tabular-out1.tabular" ftype="tabular" />
27 </test> 25 </test>
28 <test> 26 <test>
29 <expand macro="test_input" /> 27 <expand macro="test_input" />
30 <param name="types" value="rev" /> 28 <param name="type" value="rev" />
31 <param name="detailed" value="false" />
32 <output name="output" file="poretools-tabular-out2.tabular" ftype="tabular" /> 29 <output name="output" file="poretools-tabular-out2.tabular" ftype="tabular" />
33 </test> 30 </test>
34 <test> 31 <test>
35 <expand macro="test_input" /> 32 <expand macro="test_input" />
36 <param name="types" value="2D" /> 33 <param name="type" value="2D" />
37 <param name="detailed" value="true" />
38 <output name="output" file="poretools-tabular-out3.tabular" ftype="tabular" /> 34 <output name="output" file="poretools-tabular-out3.tabular" ftype="tabular" />
39 </test> 35 </test>
40 <test> 36 <test>
41 <expand macro="test_input" /> 37 <expand macro="test_input" />
42 <param name="types" value="best" /> 38 <param name="type" value="best" />
43 <param name="detailed" value="false" />
44 <output name="output" file="poretools-tabular-out4.tabular" ftype="tabular" /> 39 <output name="output" file="poretools-tabular-out4.tabular" ftype="tabular" />
45 </test> 40 </test>
46 <test> 41 <test>
47 <expand macro="test_input" /> 42 <expand macro="test_input" />
48 <param name="types" value="all" /> 43 <param name="type" value="all" />
49 <param name="detailed" value="true" />
50 <output name="output" file="poretools-tabular-out5.tabular" ftype="tabular" /> 44 <output name="output" file="poretools-tabular-out5.tabular" ftype="tabular" />
51 </test> 45 </test>
52 </tests> 46 </tests>
53 <help> 47 <help>
54 Dump the length, name, sequence, and quality scores of the sequence in one or a set of FAST5 files. 48 Dump the length, name, sequence, and quality scores of the sequence in one or a set of FAST5 files.