Mercurial > repos > iuc > poretools_squiggle

comparison poretools_squiggle.xml @ 3:a4f86ce6c19e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:45:03 +0000
parents 29b192ad312f
children
comparison
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2:29b192ad312f 3:a4f86ce6c19e
1 <?xml version="1.0"?> 1 <tool id="poretools_squiggle" name="Plot signals" version="@VERSION@.1" profile="@PROFILE@">
2 <tool id="poretools_squiggle" name="Plot signals" version="@VERSION@.1" profile="@profile@">
3 <description>for nanopore reads</description> 2 <description>for nanopore reads</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 @MPLBACKEND@ 10 @MPLBACKEND@
12 poretools squiggle '$input' --saveas $extension --num-facets $num_facets $theme_bw 11 poretools squiggle '$input' --saveas $extension --num-facets $num_facets $theme_bw
13 ]]> 12 ]]>
14 </command> 13 </command>
15 <inputs> 14 <inputs>
16 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> 15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
17 <expand macro="plot_options" /> 16 <expand macro="plot_options" />
18 <param name="num_facets" argument="--num-facets" type="integer" value="6" label="Number of plot facets" /> 17 <param argument="--num-facets" type="integer" value="6" label="Number of plot facets" />
19 </inputs> 18 </inputs>
20 <outputs> 19 <outputs>
21 <data format="txt" name="output"> 20 <data format="txt" name="output">
22 <discover_datasets pattern="__designation_and_ext__" directory="." visible="true" /> 21 <discover_datasets pattern="__designation_and_ext__" directory="." visible="true" />
23 </data> 22 </data>