Mercurial > repos > iuc > poretools_qualpos

comparison poretools_qualpos.xml @ 3:6dfcd712294c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:42:44 +0000
parents 01a6b18b0a77
children
comparison
equal deleted inserted replaced
2:01a6b18b0a77 3:6dfcd712294c
1 <?xml version="1.0"?> 1 <tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1" profile="@PROFILE@">
2 <tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1">
3 <description>plot of quality score distribution over positions in nanopore reads</description> 2 <description>plot of quality score distribution over positions in nanopore reads</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 @MPLBACKEND@ 10 @MPLBACKEND@
12 poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output' 11 poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output'
13 ]]> 12 ]]>
14 </command> 13 </command>
15 <inputs> 14 <inputs>
16 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> 15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
17 <expand macro="plot_options"> 16 <expand macro="plot_options"/>
18 <option value="pdf">PDF</option>
19 <option value="svg">SVG</option>
20 </expand>
21 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color " />
22 <expand macro="length_options" /> 17 <expand macro="length_options" />
23 <param name="bin_width" argument="--bin-width" type="integer" value="1000" label="The width of bins" /> 18 <param argument="--bin-width" type="integer" value="1000" label="The width of bins" />
24 </inputs> 19 </inputs>
25 <outputs> 20 <outputs>
26 <expand macro="image_output"> 21 <expand macro="image_output">
27 <when input="extension" value="svg" format="svg" /> 22 <when input="extension" value="svg" format="svg" />
28 </expand> 23 </expand>