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comparison poretools_hist.xml @ 3:06748ab33ee4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:43:49 +0000
parents de8ffa29391f
children
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2:de8ffa29391f 3:06748ab33ee4
1 <?xml version="1.0"?> 1 <tool id="poretools_hist" name="Generate histogram" version="@VERSION@.1" profile="@PROFILE@">
2 <tool id="poretools_hist" name="Generate histogram" version="@VERSION@.1">
3 <description>of nanopore read lengths</description> 2 <description>of nanopore read lengths</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 @MPLBACKEND@ 10 @MPLBACKEND@
12 poretools hist '$input' --saveas histogram.$extension --min-length $min_length --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output' 11 poretools hist '$input' --saveas histogram.$extension --min-length $min_length --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output'
14 </command> 13 </command>
15 <inputs> 14 <inputs>
16 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> 15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
17 <expand macro="plot_options" /> 16 <expand macro="plot_options" />
18 <expand macro="length_options" /> 17 <expand macro="length_options" />
19 <param name="num_bins" argument="--num-bins" type="integer" value="50" label="Number of bins in the histogram" /> 18 <param argument="--num-bins" type="integer" value="50" label="Number of bins in the histogram" />
20 </inputs> 19 </inputs>
21 <outputs> 20 <outputs>
22 <expand macro="image_output" /> 21 <expand macro="image_output" />
23 </outputs> 22 </outputs>
24 <tests> 23 <tests>