Mercurial > repos > iuc > poretools_hist
comparison poretools_hist.xml @ 0:e3671d61f0a0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
| author | iuc |
|---|---|
| date | Tue, 19 Dec 2017 14:25:03 -0500 |
| parents | |
| children | 5deb028db68e |
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| -1:000000000000 | 0:e3671d61f0a0 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="poretools_hist" name="Generate histogram" version="@VERSION@.0"> | |
| 3 <description>of nanopore read lengths</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements" /> | |
| 8 <command detect_errors="aggressive"> | |
| 9 <![CDATA[ | |
| 10 poretools hist '$input' --saveas histogram.$extension --min-length $min_length | |
| 11 --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output' | |
| 12 ]]> | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> | |
| 16 <expand macro="plot_options" /> | |
| 17 <expand macro="length_options" /> | |
| 18 <param name="num_bins" argument="--num-bins" type="integer" value="50" label="Number of bins in the histogram" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <expand macro="image_output" /> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 <test> | |
| 25 <expand macro="test_input" /> | |
| 26 <param name="extension" value="png" /> | |
| 27 <output name="output" file="poretools-hist-out1.png" ftype="png" lines_diff="73" /> | |
| 28 </test> | |
| 29 <test> | |
| 30 <expand macro="test_input" /> | |
| 31 <param name="extension" value="pdf" /> | |
| 32 <output name="output" file="poretools-hist-out1.pdf" ftype="pdf" lines_diff="36" /> | |
| 33 </test> | |
| 34 <test> | |
| 35 <expand macro="test_input" /> | |
| 36 <param name="extension" value="svg" /> | |
| 37 <output name="output" file="poretools-hist-out1.svg" ftype="svg" lines_diff="138" /> | |
| 38 </test> | |
| 39 </tests> | |
| 40 <help> | |
| 41 Draw a histogram of read lengths in one or more nanopore reads. | |
| 42 </help> | |
| 43 <expand macro="citations" /> | |
| 44 </tool> |