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comparison poretools_events.xml @ 0:9a0daf9a81d5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:14:42 -0500
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children 28b11a08f348
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-1:000000000000 0:9a0daf9a81d5
1 <?xml version="1.0"?>
2 <tool id="poretools_events" name="Extract nanopore events" version="@VERSION@.0">
3 <description>from a set of sequencing reads</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements" />
8 <command detect_errors="aggressive">
9 <![CDATA[
10 poretools events $precalled '$input' > '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
15 <param name="precalled" argument="--pre-basecalled" type="boolean" truevalue="--pre-basecalled" falsevalue="--pre-basecalled" label="Report pre-basecalled events" />
16 </inputs>
17 <outputs>
18 <data name="output" format="tabular" />
19 </outputs>
20 <tests>
21 <test>
22 <expand macro="test_input" />
23 <param name="precalled" value="false" />
24 <output name="output" file="poretools-events-out1.tabular" ftype="tabular" />
25 </test>
26 <test>
27 <expand macro="test_input" />
28 <param name="precalled" value="true" />
29 <output name="output" file="poretools-events-out2.tabular" ftype="tabular" />
30 </test>
31 </tests>
32 <help>
33 Extract the raw nanopore events from each FAST5 file.
34 </help>
35 <expand macro="citations" />
36 </tool>