Mercurial > repos > iuc > polypolish

comparison test-data/debug_file_test_2.tsv @ 0:0c094ece2c73 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/polypolish commit 95f351736787f04c65e830cd9daf9c9c8521893a
author iuc
date Thu, 22 Sep 2022 07:50:58 +0000
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comparison
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-1:000000000000 0:0c094ece2c73
1 name pos base depth invalid valid pileup status new_base
2 contig00001 0 C 0.0 0 5 low_depth C
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2143 contig00001 2141 C 5.0 1 5 Cx4,Gx1 none C
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2145 contig00001 2143 G 5.0 1 5 Gx5 kept G
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2147 contig00001 2145 A 5.0 1 5 Ax5 kept A
2148 contig00001 2146 A 5.0 1 5 Ax5 kept A
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2150 contig00001 2148 C 5.0 1 5 Cx5 kept C
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2157 contig00001 2155 T 5.0 1 5 Tx5 kept T
2158 contig00001 2156 G 6.0 1 5 Gx6 kept G
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2163 contig00001 2161 G 6.0 1 5 Gx6 kept G
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2166 contig00001 2164 A 6.0 1 5 Ax6 kept A
2167 contig00001 2165 G 6.0 1 5 Gx6 kept G
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2174 contig00001 2172 G 6.0 1 5 Gx6 kept G
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2193 contig00001 2191 A 6.0 1 5 Ax6 kept A
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2217 contig00001 2215 T 6.0 1 5 Tx6 kept T
2218 contig00001 2216 G 6.0 1 5 Gx6 kept G
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2221 contig00001 2219 A 7.0 1 5 Ax7 kept A
2222 contig00001 2220 A 7.0 1 5 Ax7 kept A
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2226 contig00001 2224 A 7.0 1 5 Ax6,Tx1 too_close A
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2233 contig00001 2231 C 7.0 1 5 Cx7 kept C
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2359 contig00001 2357 T 6.0 1 5 Tx6 kept T
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2408 contig00001 2406 A 5.0 1 5 Ax5 kept A
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2430 contig00001 2428 C 5.0 1 5 Cx5 kept C
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2665 contig00001 2663 T 4.0 1 5 Tx4 low_depth T
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2721 contig00001 2719 T 5.0 1 5 Tx5 kept T
2722 contig00001 2720 G 5.0 1 5 Gx5 kept G
2723 contig00001 2721 A 5.0 1 5 Ax5 kept A
2724 contig00001 2722 A 5.0 1 5 Ax5 kept A
2725 contig00001 2723 T 5.0 1 5 Tx5 kept T
2726 contig00001 2724 G 5.0 1 5 Gx5 kept G
2727 contig00001 2725 C 5.0 1 5 Cx5 kept C
2728 contig00001 2726 C 5.0 1 5 Cx5 kept C
2729 contig00001 2727 A 5.0 1 5 Ax5 kept A
2730 contig00001 2728 C 5.0 1 5 Cx5 kept C
2731 contig00001 2729 C 5.0 1 5 Cx5 kept C
2732 contig00001 2730 G 5.0 1 5 Gx5 kept G
2733 contig00001 2731 G 5.0 1 5 Gx5 kept G
2734 contig00001 2732 A 5.0 1 5 Ax5 kept A
2735 contig00001 2733 G 5.0 1 5 Gx5 kept G
2736 contig00001 2734 G 5.0 1 5 Gx5 kept G
2737 contig00001 2735 C 5.0 1 5 Cx5 kept C
2738 contig00001 2736 G 5.0 1 5 Gx5 kept G
2739 contig00001 2737 G 5.0 1 5 Gx5 kept G
2740 contig00001 2738 C 5.0 1 5 Cx5 kept C
2741 contig00001 2739 T 5.0 1 5 Tx5 kept T
2742 contig00001 2740 T 5.0 1 5 Tx5 kept T
2743 contig00001 2741 T 5.0 1 5 Tx5 kept T
2744 contig00001 2742 T 5.0 1 5 Tx5 kept T
2745 contig00001 2743 T 5.0 1 5 Tx5 kept T
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2748 contig00001 2746 C 5.0 1 5 Cx5 kept C
2749 contig00001 2747 C 5.0 1 5 Cx5 kept C
2750 contig00001 2748 G 5.0 1 5 Gx5 kept G
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2752 contig00001 2750 C 5.0 1 5 Cx5 kept C
2753 contig00001 2751 T 5.0 1 5 Tx5 kept T
2754 contig00001 2752 C 5.0 1 5 Cx5 kept C
2755 contig00001 2753 C 5.0 1 5 Cx5 kept C
2756 contig00001 2754 A 5.0 1 5 Ax5 kept A
2757 contig00001 2755 A 5.0 1 5 Ax5 kept A
2758 contig00001 2756 A 5.0 1 5 Ax5 kept A
2759 contig00001 2757 C 5.0 1 5 Cx5 kept C
2760 contig00001 2758 A 5.0 1 5 Ax5 kept A
2761 contig00001 2759 A 5.0 1 5 Ax5 kept A
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2763 contig00001 2761 T 5.0 1 5 Tx5 kept T
2764 contig00001 2762 T 5.0 1 5 Tx5 kept T
2765 contig00001 2763 A 5.0 1 5 Ax5 kept A
2766 contig00001 2764 G 5.0 1 5 Gx5 kept G
2767 contig00001 2765 A 5.0 1 5 Ax5 kept A
2768 contig00001 2766 C 5.0 1 5 Cx5 kept C
2769 contig00001 2767 A 5.0 1 5 Ax5 kept A
2770 contig00001 2768 T 5.0 1 5 Tx5 kept T
2771 contig00001 2769 G 5.0 1 5 Gx5 kept G
2772 contig00001 2770 G 5.0 1 5 Gx5 kept G
2773 contig00001 2771 C 5.0 1 5 Cx5 kept C
2774 contig00001 2772 G 5.0 1 5 Gx5 kept G
2775 contig00001 2773 C 5.0 1 5 Cx5 kept C
2776 contig00001 2774 C 5.0 1 5 Cx5 kept C
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2778 contig00001 2776 C 5.0 1 5 Cx5 kept C
2779 contig00001 2777 C 5.0 1 5 Cx5 kept C
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2781 contig00001 2779 G 5.0 1 5 Gx5 kept G
2782 contig00001 2780 C 5.0 1 5 Cx5 kept C
2783 contig00001 2781 A 5.0 1 5 Ax5 kept A
2784 contig00001 2782 A 5.0 1 5 Ax5 kept A
2785 contig00001 2783 G 5.0 1 5 Gx5 kept G
2786 contig00001 2784 A 5.0 1 5 Ax5 kept A
2787 contig00001 2785 G 5.0 1 5 Gx5 kept G
2788 contig00001 2786 C 5.0 1 5 Cx5 kept C
2789 contig00001 2787 A 5.0 1 5 Ax5 kept A
2790 contig00001 2788 G 5.0 1 5 Gx5 kept G
2791 contig00001 2789 A 5.0 1 5 Ax5 kept A
2792 contig00001 2790 A 5.0 1 5 Ax5 kept A
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2794 contig00001 2792 C 5.0 1 5 Cx5 kept C
2795 contig00001 2793 A 5.0 1 5 Ax5 kept A
2796 contig00001 2794 A 5.0 1 5 Ax5 kept A
2797 contig00001 2795 T 5.0 1 5 Tx5 kept T
2798 contig00001 2796 A 5.0 1 5 Ax5 kept A
2799 contig00001 2797 C 5.0 1 5 Cx5 kept C
2800 contig00001 2798 C 5.0 1 5 Cx5 kept C
2801 contig00001 2799 G 5.0 1 5 Gx5 kept G
2802 contig00001 2800 C 5.0 1 5 Cx5 kept C
2803 contig00001 2801 C 5.0 1 5 Cx5 kept C
2804 contig00001 2802 A 5.0 1 5 Ax5 kept A
2805 contig00001 2803 G 5.0 1 5 Gx5 kept G
2806 contig00001 2804 C 5.0 1 5 Cx5 kept C
2807 contig00001 2805 A 5.0 1 5 Ax5 kept A
2808 contig00001 2806 A 5.0 1 5 Ax5 kept A
2809 contig00001 2807 T 5.0 1 5 Tx5 kept T
2810 contig00001 2808 A 5.0 1 5 Ax5 kept A
2811 contig00001 2809 G 5.0 1 5 Gx5 kept G
2812 contig00001 2810 C 5.0 1 5 Cx5 kept C
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2814 contig00001 2812 C 5.0 1 5 Cx5 kept C
2815 contig00001 2813 C 5.0 1 5 Cx5 kept C
2816 contig00001 2814 A 5.0 1 5 Ax5 kept A
2817 contig00001 2815 A 5.0 1 5 Ax5 kept A
2818 contig00001 2816 A 5.0 1 5 Ax5 kept A
2819 contig00001 2817 C 5.0 1 5 Cx5 kept C
2820 contig00001 2818 A 5.0 1 5 Ax5 kept A
2821 contig00001 2819 T 5.0 1 5 Tx5 kept T
2822 contig00001 2820 A 5.0 1 5 Ax5 kept A
2823 contig00001 2821 A 5.0 1 5 Ax5 kept A
2824 contig00001 2822 A 5.0 1 5 Ax5 kept A
2825 contig00001 2823 T 6.0 1 5 Tx6 kept T
2826 contig00001 2824 C 6.0 1 5 Cx6 kept C
2827 contig00001 2825 A 6.0 1 5 Ax6 kept A
2828 contig00001 2826 C 6.0 1 5 Cx6 kept C
2829 contig00001 2827 C 6.0 1 5 Cx6 kept C
2830 contig00001 2828 T 6.0 1 5 Tx6 kept T
2831 contig00001 2829 C 6.0 1 5 Cx6 kept C
2832 contig00001 2830 A 6.0 1 5 Ax6 kept A
2833 contig00001 2831 C 6.0 1 5 Cx6 kept C
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2835 contig00001 2833 T 6.0 1 5 Tx6 kept T
2836 contig00001 2834 A 6.0 1 5 Ax6 kept A
2837 contig00001 2835 A 6.0 1 5 Ax6 kept A
2838 contig00001 2836 G 6.0 1 5 Gx6 kept G
2839 contig00001 2837 T 6.0 1 5 Tx6 kept T
2840 contig00001 2838 G 6.0 1 5 Gx6 kept G
2841 contig00001 2839 G 6.0 1 5 Gx6 kept G
2842 contig00001 2840 C 6.0 1 5 Cx6 kept C
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2844 contig00001 2842 G 6.0 1 5 Gx6 kept G
2845 contig00001 2843 G 6.0 1 5 Gx6 kept G
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2855 contig00001 2853 A 6.0 1 5 Ax6 kept A
2856 contig00001 2854 T 6.0 1 5 Tx6 kept T
2857 contig00001 2855 C 6.0 1 5 Cx6 kept C
2858 contig00001 2856 T 6.0 1 5 Cx1,Tx5 too_close T
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2860 contig00001 2858 T 6.0 1 5 Tx6 kept T
2861 contig00001 2859 T 6.0 1 5 Tx6 kept T
2862 contig00001 2860 T 6.0 1 5 Tx6 kept T
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2865 contig00001 2863 T 6.0 1 5 Tx6 kept T
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2867 contig00001 2865 A 6.0 1 5 Ax6 kept A
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2892 contig00001 2890 G 6.0 1 5 Gx6 kept G
2893 contig00001 2891 G 6.0 1 5 Gx6 kept G
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2897 contig00001 2895 T 7.0 1 5 Tx7 kept T
2898 contig00001 2896 T 7.0 1 5 Tx7 kept T
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2906 contig00001 2904 G 6.0 1 5 Gx6 kept G
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2909 contig00001 2907 A 6.0 1 5 Ax6 kept A
2910 contig00001 2908 A 6.0 1 5 Ax6 kept A
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2913 contig00001 2911 T 6.0 1 5 Tx6 kept T
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2929 contig00001 2927 A 6.0 1 5 Ax6 kept A
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2931 contig00001 2929 C 6.0 1 5 Cx6 kept C
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2933 contig00001 2931 A 6.0 1 5 Ax6 kept A
2934 contig00001 2932 C 6.0 1 5 Cx6 kept C
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2936 contig00001 2934 T 6.0 1 5 Tx6 kept T
2937 contig00001 2935 A 6.0 1 5 Ax6 kept A
2938 contig00001 2936 A 6.0 1 5 Ax6 kept A
2939 contig00001 2937 A 6.0 1 5 Ax5,Cx1 too_close A
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2943 contig00001 2941 T 6.0 1 5 Tx6 kept T
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2946 contig00001 2944 T 6.0 1 5 Gx1,Tx5 too_close T
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2949 contig00001 2947 C 6.0 1 5 Cx6 kept C
2950 contig00001 2948 C 6.0 1 5 Cx6 kept C
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2952 contig00001 2950 G 6.0 1 5 Gx6 kept G
2953 contig00001 2951 C 6.0 1 5 Cx6 kept C
2954 contig00001 2952 G 6.0 1 5 Gx6 kept G
2955 contig00001 2953 T 6.0 1 5 Tx6 kept T
2956 contig00001 2954 A 6.0 1 5 Ax6 kept A
2957 contig00001 2955 C 5.0 1 5 Cx5 kept C
2958 contig00001 2956 G 5.0 1 5 Gx5 kept G
2959 contig00001 2957 G 5.0 1 5 Gx5 kept G
2960 contig00001 2958 G 5.0 1 5 Gx5 kept G
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4283 contig00001 4281 C 4.0 1 5 Cx4 low_depth C
4284 contig00001 4282 A 4.0 1 5 Ax4 low_depth A
4285 contig00001 4283 T 4.0 1 5 Tx4 low_depth T
4286 contig00001 4284 C 4.0 1 5 Cx4 low_depth C
4287 contig00001 4285 A 4.0 1 5 Ax4 low_depth A
4288 contig00001 4286 T 4.0 1 5 Tx4 low_depth T
4289 contig00001 4287 C 4.0 1 5 Cx4 low_depth C
4290 contig00001 4288 T 4.0 1 5 Tx4 low_depth T
4291 contig00001 4289 T 4.0 1 5 Tx4 low_depth T
4292 contig00001 4290 G 4.0 1 5 Gx4 low_depth G
4293 contig00001 4291 A 4.0 1 5 Ax4 low_depth A
4294 contig00001 4292 T 4.0 1 5 Tx4 low_depth T
4295 contig00001 4293 T 4.0 1 5 Tx4 low_depth T
4296 contig00001 4294 A 4.0 1 5 Ax4 low_depth A
4297 contig00001 4295 A 4.0 1 5 Ax4 low_depth A
4298 contig00001 4296 G 4.0 1 5 Gx4 low_depth G
4299 contig00001 4297 C 4.0 1 5 Cx4 low_depth C
4300 contig00001 4298 T 4.0 1 5 Tx4 low_depth T
4301 contig00001 4299 C 4.0 1 5 Cx4 low_depth C
4302 contig00001 4300 A 4.0 1 5 Ax4 low_depth A
4303 contig00001 4301 T 4.0 1 5 Tx4 low_depth T
4304 contig00001 4302 T 4.0 1 5 Tx4 low_depth T
4305 contig00001 4303 A 4.0 1 5 Ax4 low_depth A
4306 contig00001 4304 G 4.0 1 5 Gx4 low_depth G
4307 contig00001 4305 G 4.0 1 5 Gx4 low_depth G
4308 contig00001 4306 G 4.0 1 5 Gx4 low_depth G
4309 contig00001 4307 T 4.0 1 5 Tx4 low_depth T
4310 contig00001 4308 T 4.0 1 5 Tx4 low_depth T
4311 contig00001 4309 A 4.0 1 5 Ax4 low_depth A
4312 contig00001 4310 G 4.0 1 5 Gx2,Tx2 low_depth G
4313 contig00001 4311 C 4.0 1 5 Cx4 low_depth C
4314 contig00001 4312 C 4.0 1 5 Cx4 low_depth C
4315 contig00001 4313 T 4.0 1 5 Tx4 low_depth T
4316 contig00001 4314 C 4.0 1 5 Cx4 low_depth C
4317 contig00001 4315 G 4.0 1 5 Gx4 low_depth G
4318 contig00001 4316 G 4.0 1 5 Gx4 low_depth G
4319 contig00001 4317 T 4.0 1 5 Tx4 low_depth T
4320 contig00001 4318 A 4.0 1 5 Ax4 low_depth A
4321 contig00001 4319 C 4.0 1 5 Cx4 low_depth C
4322 contig00001 4320 G 4.0 1 5 Gx4 low_depth G
4323 contig00001 4321 G 4.0 1 5 Gx4 low_depth G
4324 contig00001 4322 T 4.0 1 5 Tx4 low_depth T
4325 contig00001 4323 C 4.0 1 5 Cx4 low_depth C
4326 contig00001 4324 A 4.0 1 5 Ax4 low_depth A
4327 contig00001 4325 G 4.0 1 5 Gx4 low_depth G
4328 contig00001 4326 G 4.0 1 5 Gx4 low_depth G
4329 contig00001 4327 C 4.0 1 5 Cx4 low_depth C
4330 contig00001 4328 A 4.0 1 5 Ax4 low_depth A
4331 contig00001 4329 T 4.0 1 5 Tx4 low_depth T
4332 contig00001 4330 C 4.0 1 5 Cx4 low_depth C
4333 contig00001 4331 C 4.0 1 5 Cx4 low_depth C
4334 contig00001 4332 A 4.0 1 5 Ax4 low_depth A
4335 contig00001 4333 C 4.0 1 5 Cx4 low_depth C
4336 contig00001 4334 G 4.0 1 5 Gx4 low_depth G
4337 contig00001 4335 G 4.0 1 5 Gx4 low_depth G
4338 contig00001 4336 C 4.0 1 5 Cx4 low_depth C
4339 contig00001 4337 G 4.0 1 5 Gx4 low_depth G
4340 contig00001 4338 C 4.0 1 5 Cx4 low_depth C
4341 contig00001 4339 T 4.0 1 5 Tx4 low_depth T
4342 contig00001 4340 T 4.0 1 5 Tx4 low_depth T
4343 contig00001 4341 T 4.0 1 5 Tx4 low_depth T
4344 contig00001 4342 A 4.0 1 5 Ax4 low_depth A
4345 contig00001 4343 A 4.0 1 5 Ax4 low_depth A
4346 contig00001 4344 A 4.0 1 5 Ax4 low_depth A
4347 contig00001 4345 A 4.0 1 5 Ax4 low_depth A
4348 contig00001 4346 T 4.0 1 5 Tx4 low_depth T
4349 contig00001 4347 A 4.0 1 5 Ax4 low_depth A
4350 contig00001 4348 G 4.0 1 5 Gx4 low_depth G
4351 contig00001 4349 T 4.0 1 5 Tx4 low_depth T
4352 contig00001 4350 T 4.0 1 5 Tx4 low_depth T
4353 contig00001 4351 G 4.0 1 5 Gx4 low_depth G
4354 contig00001 4352 T 4.0 1 5 Tx4 low_depth T
4355 contig00001 4353 T 4.0 1 5 Tx4 low_depth T
4356 contig00001 4354 A 4.0 1 5 Ax4 low_depth A
4357 contig00001 4355 T 4.0 1 5 Tx4 low_depth T
4358 contig00001 4356 A 4.0 1 5 Ax4 low_depth A
4359 contig00001 4357 G 4.0 1 5 Gx4 low_depth G
4360 contig00001 4358 A 4.0 1 5 Ax4 low_depth A
4361 contig00001 4359 T 4.0 1 5 Tx4 low_depth T
4362 contig00001 4360 A 4.0 1 5 Ax4 low_depth A
4363 contig00001 4361 T 4.0 1 5 Tx4 low_depth T
4364 contig00001 4362 T 4.0 1 5 Tx4 low_depth T
4365 contig00001 4363 C 4.0 1 5 Cx4 low_depth C
4366 contig00001 4364 A 4.0 1 5 Ax4 low_depth A
4367 contig00001 4365 A 4.0 1 5 Ax4 low_depth A
4368 contig00001 4366 A 4.0 1 5 Ax4 low_depth A
4369 contig00001 4367 T 4.0 1 5 Tx4 low_depth T
4370 contig00001 4368 A 4.0 1 5 Ax4 low_depth A
4371 contig00001 4369 A 4.0 1 5 Ax4 low_depth A
4372 contig00001 4370 C 4.0 1 5 Cx4 low_depth C
4373 contig00001 4371 C 4.0 1 5 Cx4 low_depth C
4374 contig00001 4372 C 4.0 1 5 Cx4 low_depth C
4375 contig00001 4373 T 4.0 1 5 Tx4 low_depth T
4376 contig00001 4374 G 4.0 1 5 Gx4 low_depth G
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4378 contig00001 4376 A 4.0 1 5 Ax4 low_depth A
4379 contig00001 4377 A 4.0 1 5 Ax4 low_depth A
4380 contig00001 4378 C 4.0 1 5 Cx4 low_depth C
4381 contig00001 4379 A 4.0 1 5 Ax4 low_depth A
4382 contig00001 4380 A 4.0 1 5 Ax4 low_depth A
4383 contig00001 4381 A 4.0 1 5 Ax4 low_depth A
4384 contig00001 4382 T 4.0 1 5 Tx4 low_depth T
4385 contig00001 4383 G 4.0 1 5 Gx4 low_depth G
4386 contig00001 4384 C 4.0 1 5 Cx4 low_depth C
4387 contig00001 4385 T 4.0 1 5 Tx4 low_depth T
4388 contig00001 4386 T 4.0 1 5 Tx4 low_depth T
4389 contig00001 4387 A 4.0 1 5 Ax4 low_depth A
4390 contig00001 4388 G 4.0 1 5 Gx4 low_depth G
4391 contig00001 4389 G 4.0 1 5 Gx4 low_depth G
4392 contig00001 4390 G 4.0 1 5 Gx4 low_depth G
4393 contig00001 4391 A 4.0 1 5 Ax4 low_depth A
4394 contig00001 4392 T 4.0 1 5 Tx4 low_depth T
4395 contig00001 4393 T 4.0 1 5 Tx4 low_depth T
4396 contig00001 4394 T 4.0 1 5 Tx4 low_depth T
4397 contig00001 4395 T 4.0 1 5 Tx4 low_depth T
4398 contig00001 4396 A 4.0 1 5 Ax4 low_depth A
4399 contig00001 4397 T 4.0 1 5 Tx4 low_depth T
4400 contig00001 4398 T 2.0 0 5 Tx2 low_depth T
4401 contig00001 4399 G 2.0 0 5 Gx2 low_depth G
4402 contig00001 4400 G 2.0 0 5 Gx2 low_depth G
4403 contig00001 4401 T 2.0 0 5 Tx2 low_depth T
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4405 contig00001 4403 T 2.0 0 5 Tx2 low_depth T
4406 contig00001 4404 C 2.0 0 5 Cx2 low_depth C
4407 contig00001 4405 A 2.0 0 5 Ax2 low_depth A
4408 contig00001 4406 G 2.0 0 5 Gx2 low_depth G
4409 contig00001 4407 G 2.0 0 5 Gx2 low_depth G
4410 contig00001 4408 G 2.0 0 5 Gx2 low_depth G
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4412 contig00001 4410 T 2.0 0 5 Tx2 low_depth T
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4414 contig00001 4412 A 2.0 0 5 Ax2 low_depth A
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4416 contig00001 4414 C 2.0 0 5 Cx2 low_depth C
4417 contig00001 4415 G 2.0 0 5 Gx2 low_depth G
4418 contig00001 4416 T 2.0 0 5 Tx2 low_depth T
4419 contig00001 4417 G 2.0 0 5 Gx2 low_depth G
4420 contig00001 4418 C 2.0 0 5 Cx2 low_depth C
4421 contig00001 4419 C 2.0 0 5 Cx2 low_depth C
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4423 contig00001 4421 A 2.0 0 5 Ax2 low_depth A
4424 contig00001 4422 G 2.0 0 5 Gx2 low_depth G
4425 contig00001 4423 A 2.0 0 5 Ax2 low_depth A
4426 contig00001 4424 A 2.0 0 5 Ax2 low_depth A
4427 contig00001 4425 A 2.0 0 5 Ax2 low_depth A
4428 contig00001 4426 A 2.0 0 5 Ax2 low_depth A
4429 contig00001 4427 G 2.0 0 5 Gx2 low_depth G
4430 contig00001 4428 C 2.0 0 5 Cx2 low_depth C
4431 contig00001 4429 G 2.0 0 5 Gx2 low_depth G
4432 contig00001 4430 G 2.0 0 5 Gx2 low_depth G
4433 contig00001 4431 C 2.0 0 5 Cx2 low_depth C
4434 contig00001 4432 A 2.0 0 5 Ax2 low_depth A
4435 contig00001 4433 T 2.0 0 5 Tx2 low_depth T
4436 contig00001 4434 G 2.0 0 5 Gx2 low_depth G
4437 contig00001 4435 G 2.0 0 5 Gx2 low_depth G
4438 contig00001 4436 T 2.0 0 5 Tx2 low_depth T
4439 contig00001 4437 C 2.0 0 5 Cx2 low_depth C
4440 contig00001 4438 A 2.0 0 5 Ax2 low_depth A
4441 contig00001 4439 A 2.0 0 5 Ax2 low_depth A
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4443 contig00001 4441 A 2.0 0 5 Ax2 low_depth A
4444 contig00001 4442 T 2.0 0 5 Tx2 low_depth T
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4446 contig00001 4444 A 2.0 0 5 Ax2 low_depth A
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4448 contig00001 4446 C 2.0 0 5 Cx2 low_depth C
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4451 contig00001 4449 T 2.0 0 5 Tx2 low_depth T
4452 contig00001 4450 A 2.0 0 5 Ax2 low_depth A
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4454 contig00001 4452 T 2.0 0 5 Tx2 low_depth T
4455 contig00001 4453 G 2.0 0 5 Gx2 low_depth G
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4457 contig00001 4455 T 2.0 0 5 Tx2 low_depth T
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4459 contig00001 4457 A 2.0 0 5 Ax2 low_depth A
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4461 contig00001 4459 A 2.0 0 5 Ax2 low_depth A
4462 contig00001 4460 G 2.0 0 5 Gx2 low_depth G
4463 contig00001 4461 T 2.0 0 5 Tx2 low_depth T
4464 contig00001 4462 C 2.0 0 5 Cx2 low_depth C
4465 contig00001 4463 G 2.0 0 5 Gx2 low_depth G
4466 contig00001 4464 G 3.0 1 5 Gx3 low_depth G
4467 contig00001 4465 G 3.0 1 5 Gx3 low_depth G
4468 contig00001 4466 A 3.0 1 5 Ax3 low_depth A
4469 contig00001 4467 G 3.0 1 5 Gx3 low_depth G
4470 contig00001 4468 A 3.0 1 5 Ax3 low_depth A
4471 contig00001 4469 G 3.0 1 5 Gx3 low_depth G
4472 contig00001 4470 G 3.0 1 5 Gx3 low_depth G
4473 contig00001 4471 A 3.0 1 5 Ax3 low_depth A
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4475 contig00001 4473 T 2.0 0 5 Tx2 low_depth T
4476 contig00001 4474 G 2.0 0 5 Gx2 low_depth G
4477 contig00001 4475 G 2.0 0 5 Gx2 low_depth G
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4479 contig00001 4477 A 2.0 0 5 Ax2 low_depth A
4480 contig00001 4478 T 2.0 0 5 Tx2 low_depth T
4481 contig00001 4479 T 2.0 0 5 Tx2 low_depth T
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4485 contig00001 4483 A 2.0 0 5 Ax2 low_depth A
4486 contig00001 4484 C 2.0 0 5 Cx2 low_depth C
4487 contig00001 4485 C 2.0 0 5 Cx2 low_depth C
4488 contig00001 4486 A 2.0 0 5 Ax2 low_depth A
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4490 contig00001 4488 C 1.0 0 5 Cx1 low_depth C
4491 contig00001 4489 C 1.0 0 5 Cx1 low_depth C
4492 contig00001 4490 T 1.0 0 5 Tx1 low_depth T
4493 contig00001 4491 T 1.0 0 5 Tx1 low_depth T
4494 contig00001 4492 C 1.0 0 5 Cx1 low_depth C
4495 contig00001 4493 A 1.0 0 5 Ax1 low_depth A
4496 contig00001 4494 T 1.0 0 5 Tx1 low_depth T
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4499 contig00001 4497 A 1.0 0 5 Ax1 low_depth A
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4502 contig00001 4500 T 1.0 0 5 Tx1 low_depth T
4503 contig00001 4501 A 1.0 0 5 Ax1 low_depth A
4504 contig00001 4502 A 1.0 0 5 Ax1 low_depth A
4505 contig00001 4503 T 1.0 0 5 Tx1 low_depth T
4506 contig00001 4504 C 1.0 0 5 Cx1 low_depth C
4507 contig00001 4505 C 1.0 0 5 Cx1 low_depth C
4508 contig00001 4506 A 1.0 0 5 Ax1 low_depth A
4509 contig00001 4507 C 1.0 0 5 Cx1 low_depth C
4510 contig00001 4508 T 1.0 0 5 Tx1 low_depth T
4511 contig00001 4509 G 1.0 0 5 Gx1 low_depth G
4512 contig00001 4510 T 1.0 0 5 Tx1 low_depth T
4513 contig00001 4511 T 1.0 0 5 Tx1 low_depth T
4514 contig00001 4512 C 1.0 0 5 Cx1 low_depth C
4515 contig00001 4513 A 1.0 0 5 Ax1 low_depth A
4516 contig00001 4514 C 1.0 0 5 Cx1 low_depth C
4517 contig00001 4515 C 1.0 0 5 Cx1 low_depth C
4518 contig00001 4516 A 1.0 0 5 Ax1 low_depth A
4519 contig00001 4517 T 1.0 0 5 Tx1 low_depth T
4520 contig00001 4518 A 1.0 0 5 Ax1 low_depth A
4521 contig00001 4519 A 1.0 0 5 Ax1 low_depth A
4522 contig00001 4520 A 1.0 0 5 Ax1 low_depth A
4523 contig00001 4521 C 1.0 0 5 Cx1 low_depth C
4524 contig00001 4522 G 1.0 0 5 Gx1 low_depth G
4525 contig00001 4523 T 1.0 0 5 Tx1 low_depth T
4526 contig00001 4524 G 1.0 0 5 Gx1 low_depth G
4527 contig00001 4525 A 1.0 0 5 Ax1 low_depth A
4528 contig00001 4526 C 1.0 0 5 Cx1 low_depth C
4529 contig00001 4527 G 1.0 0 5 Gx1 low_depth G
4530 contig00001 4528 A 1.0 0 5 Ax1 low_depth A
4531 contig00001 4529 T 1.0 0 5 Tx1 low_depth T
4532 contig00001 4530 G 1.0 0 5 Gx1 low_depth G
4533 contig00001 4531 A 1.0 0 5 Ax1 low_depth A
4534 contig00001 4532 G 1.0 0 5 Gx1 low_depth G
4535 contig00001 4533 G 1.0 0 5 Gx1 low_depth G
4536 contig00001 4534 G 1.0 0 5 Gx1 low_depth G
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4538 contig00001 4536 C 1.0 0 5 Cx1 low_depth C
4539 contig00001 4537 A 1.0 0 5 Ax1 low_depth A
4540 contig00001 4538 T 1.0 0 5 Tx1 low_depth T
4541 contig00001 4539 A 1.0 0 5 Ax1 low_depth A
4542 contig00001 4540 A 1.0 0 5 Ax1 low_depth A
4543 contig00001 4541 A 1.0 0 5 Ax1 low_depth A
4544 contig00001 4542 A 1.0 0 5 Ax1 low_depth A
4545 contig00001 4543 A 1.0 0 5 Ax1 low_depth A
4546 contig00001 4544 G 1.0 0 5 Gx1 low_depth G
4547 contig00001 4545 T 1.0 0 5 Tx1 low_depth T
4548 contig00001 4546 A 1.0 0 5 Ax1 low_depth A
4549 contig00001 4547 A 1.0 0 5 Ax1 low_depth A
4550 contig00001 4548 A 1.0 0 5 Ax1 low_depth A
4551 contig00001 4549 A 1.0 0 5 Ax1 low_depth A
4552 contig00001 4550 A 1.0 0 5 Ax1 low_depth A
4553 contig00001 4551 T 1.0 0 5 Tx1 low_depth T
4554 contig00001 4552 G 1.0 0 5 Gx1 low_depth G
4555 contig00001 4553 T 1.0 0 5 Tx1 low_depth T
4556 contig00001 4554 C 1.0 0 5 Cx1 low_depth C
4557 contig00001 4555 T 1.0 0 5 Tx1 low_depth T
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4559 contig00001 4557 C 1.0 0 5 Cx1 low_depth C
4560 contig00001 4558 A 1.0 0 5 Ax1 low_depth A
4561 contig00001 4559 G 1.0 0 5 Gx1 low_depth G
4562 contig00001 4560 T 1.0 0 5 Tx1 low_depth T
4563 contig00001 4561 A 1.0 0 5 Ax1 low_depth A
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4565 contig00001 4563 A 1.0 0 5 Ax1 low_depth A
4566 contig00001 4564 G 1.0 0 5 Gx1 low_depth G
4567 contig00001 4565 T 1.0 0 5 Tx1 low_depth T
4568 contig00001 4566 C 1.0 0 5 Cx1 low_depth C
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4570 contig00001 4568 A 1.0 0 5 Ax1 low_depth A
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4575 contig00001 4573 A 1.0 0 5 Ax1 low_depth A
4576 contig00001 4574 A 1.0 0 5 Ax1 low_depth A
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4578 contig00001 4576 G 1.0 0 5 Gx1 low_depth G
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4580 contig00001 4578 C 1.0 0 5 Cx1 low_depth C
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4584 contig00001 4582 A 1.0 0 5 Ax1 low_depth A
4585 contig00001 4583 C 1.0 0 5 Cx1 low_depth C
4586 contig00001 4584 G 1.0 0 5 Gx1 low_depth G
4587 contig00001 4585 C 1.0 0 5 Cx1 low_depth C
4588 contig00001 4586 A 1.0 0 5 Ax1 low_depth A
4589 contig00001 4587 A 1.0 0 5 Ax1 low_depth A
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4592 contig00001 4590 G 1.0 0 5 Gx1 low_depth G
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4594 contig00001 4592 G 1.0 0 5 Gx1 low_depth G
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4596 contig00001 4594 A 1.0 0 5 Ax1 low_depth A
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4602 contig00001 4600 G 1.0 0 5 Gx1 low_depth G
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4604 contig00001 4602 G 1.0 0 5 Gx1 low_depth G
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4608 contig00001 4606 G 1.0 0 5 Gx1 low_depth G
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4617 contig00001 4615 G 1.0 0 5 Gx1 low_depth G
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4619 contig00001 4617 C 1.0 0 5 Cx1 low_depth C
4620 contig00001 4618 C 1.0 0 5 Cx1 low_depth C
4621 contig00001 4619 A 1.0 0 5 Ax1 low_depth A
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4624 contig00001 4622 T 1.0 0 5 Tx1 low_depth T
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4631 contig00001 4629 A 1.0 0 5 Ax1 low_depth A
4632 contig00001 4630 G 1.0 0 5 Gx1 low_depth G
4633 contig00001 4631 T 1.0 0 5 Tx1 low_depth T
4634 contig00001 4632 C 1.0 0 5 Cx1 low_depth C
4635 contig00001 4633 G 1.0 0 5 Gx1 low_depth G
4636 contig00001 4634 C 1.0 0 5 Cx1 low_depth C
4637 contig00001 4635 C 1.0 0 5 Cx1 low_depth C
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4641 contig00001 4639 G 1.0 0 5 Gx1 low_depth G
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4645 contig00001 4643 A 1.0 0 5 Ax1 low_depth A
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4647 contig00001 4645 C 1.0 0 5 Cx1 low_depth C
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4649 contig00001 4647 G 1.0 0 5 Gx1 low_depth G
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4651 contig00001 4649 G 1.0 0 5 Gx1 low_depth G
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4659 contig00001 4657 A 1.0 0 5 Ax1 low_depth A
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4664 contig00001 4662 T 1.0 0 5 Tx1 low_depth T
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4675 contig00001 4673 C 1.0 0 5 Cx1 low_depth C
4676 contig00001 4674 C 1.0 0 5 Cx1 low_depth C
4677 contig00001 4675 A 1.0 0 5 Ax1 low_depth A
4678 contig00001 4676 A 1.0 0 5 Ax1 low_depth A
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7418 contig00002 1903 T 2.0 0 5 Tx2 low_depth T
7419 contig00002 1904 T 2.0 0 5 Tx2 low_depth T
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7429 contig00002 1914 T 2.0 0 5 Tx2 low_depth T
7430 contig00002 1915 A 2.0 0 5 Ax2 low_depth A
7431 contig00002 1916 T 2.0 0 5 Tx2 low_depth T
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7433 contig00002 1918 T 2.0 0 5 Tx2 low_depth T
7434 contig00002 1919 T 2.0 0 5 Tx2 low_depth T
7435 contig00002 1920 T 2.0 0 5 Tx2 low_depth T
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7441 contig00002 1926 T 2.0 0 5 Tx2 low_depth T
7442 contig00002 1927 T 2.0 0 5 Tx2 low_depth T
7443 contig00002 1928 A 2.0 0 5 Ax2 low_depth A
7444 contig00002 1929 A 2.0 0 5 Ax2 low_depth A
7445 contig00002 1930 C 2.0 0 5 Cx2 low_depth C
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7447 contig00002 1932 G 2.0 0 5 Gx2 low_depth G
7448 contig00002 1933 T 2.0 0 5 Tx2 low_depth T
7449 contig00002 1934 T 2.0 0 5 Tx2 low_depth T
7450 contig00002 1935 T 2.0 0 5 Tx2 low_depth T
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7452 contig00002 1937 T 2.0 0 5 Tx2 low_depth T
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7456 contig00002 1941 G 2.0 0 5 Gx2 low_depth G
7457 contig00002 1942 G 2.0 0 5 Gx2 low_depth G
7458 contig00002 1943 A 2.0 0 5 Ax2 low_depth A
7459 contig00002 1944 A 2.0 0 5 Ax2 low_depth A
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7463 contig00002 1948 A 2.0 0 5 Ax2 low_depth A
7464 contig00002 1949 A 2.0 0 5 Ax2 low_depth A
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7469 contig00002 1954 T 2.0 0 5 Tx2 low_depth T
7470 contig00002 1955 T 2.0 0 5 Tx2 low_depth T
7471 contig00002 1956 T 2.0 0 5 Tx2 low_depth T
7472 contig00002 1957 T 2.0 0 5 Tx2 low_depth T
7473 contig00002 1958 A 2.0 0 5 Ax2 low_depth A
7474 contig00002 1959 A 2.0 0 5 Ax2 low_depth A
7475 contig00002 1960 T 2.0 0 5 Tx2 low_depth T
7476 contig00002 1961 T 2.0 0 5 Tx2 low_depth T
7477 contig00002 1962 C 2.0 0 5 Cx2 low_depth C
7478 contig00002 1963 G 2.0 0 5 Gx2 low_depth G
7479 contig00002 1964 G 2.0 0 5 Gx2 low_depth G
7480 contig00002 1965 A 2.0 0 5 Ax2 low_depth A
7481 contig00002 1966 A 2.0 0 5 Ax2 low_depth A
7482 contig00002 1967 A 2.0 0 5 Ax2 low_depth A
7483 contig00002 1968 C 2.0 0 5 Cx2 low_depth C
7484 contig00002 1969 T 2.0 0 5 Tx2 low_depth T
7485 contig00002 1970 T 2.0 0 5 Tx2 low_depth T
7486 contig00002 1971 G 2.0 0 5 Gx2 low_depth G
7487 contig00002 1972 G 2.0 0 5 Gx2 low_depth G
7488 contig00002 1973 T 2.0 0 5 Tx2 low_depth T
7489 contig00002 1974 T 2.0 0 5 Tx2 low_depth T
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7491 contig00002 1976 G 2.0 0 5 Gx2 low_depth G
7492 contig00002 1977 T 2.0 0 5 Tx2 low_depth T
7493 contig00002 1978 G 2.0 0 5 Gx2 low_depth G
7494 contig00002 1979 T 2.0 0 5 Tx2 low_depth T
7495 contig00002 1980 T 2.0 0 5 Tx2 low_depth T
7496 contig00002 1981 T 2.0 0 5 Tx2 low_depth T
7497 contig00002 1982 T 2.0 0 5 Tx2 low_depth T
7498 contig00002 1983 T 2.0 0 5 Tx2 low_depth T
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7500 contig00002 1985 T 2.0 0 5 Tx2 low_depth T
7501 contig00002 1986 G 2.0 0 5 Gx2 low_depth G
7502 contig00002 1987 G 2.0 0 5 Gx2 low_depth G
7503 contig00002 1988 T 2.0 0 5 Tx2 low_depth T
7504 contig00002 1989 T 2.0 0 5 Tx2 low_depth T
7505 contig00002 1990 T 2.0 0 5 Tx2 low_depth T
7506 contig00002 1991 T 2.0 0 5 Tx2 low_depth T
7507 contig00002 1992 T 2.0 0 5 Tx2 low_depth T
7508 contig00002 1993 G 2.0 0 5 Gx2 low_depth G
7509 contig00002 1994 G 2.0 0 5 Gx2 low_depth G
7510 contig00002 1995 T 2.0 0 5 Tx2 low_depth T
7511 contig00002 1996 T 2.0 0 5 Tx2 low_depth T
7512 contig00002 1997 T 2.0 0 5 Tx2 low_depth T
7513 contig00002 1998 T 2.0 0 5 Tx2 low_depth T
7514 contig00002 1999 T 2.0 0 5 Tx2 low_depth T
7515 contig00002 2000 G 2.0 0 5 Gx2 low_depth G
7516 contig00002 2001 A 2.0 0 5 Ax2 low_depth A
7517 contig00002 2002 T 2.0 0 5 Tx2 low_depth T
7518 contig00002 2003 T 2.0 0 5 Tx2 low_depth T
7519 contig00002 2004 T 2.0 0 5 Tx2 low_depth T
7520 contig00002 2005 T 2.0 0 5 Tx2 low_depth T
7521 contig00002 2006 T 2.0 0 5 Tx2 low_depth T
7522 contig00002 2007 C 2.0 0 5 Cx2 low_depth C
7523 contig00002 2008 G 2.0 0 5 Gx2 low_depth G
7524 contig00002 2009 C 2.0 0 5 Cx2 low_depth C
7525 contig00002 2010 C 2.0 0 5 Cx2 low_depth C
7526 contig00002 2011 A 2.0 0 5 Ax2 low_depth A
7527 contig00002 2012 A 2.0 0 5 Ax2 low_depth A
7528 contig00002 2013 C 2.0 0 5 Cx2 low_depth C
7529 contig00002 2014 T 2.0 0 5 Tx2 low_depth T
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7533 contig00002 2018 T 2.0 0 5 Tx2 low_depth T
7534 contig00002 2019 T 2.0 0 5 Tx2 low_depth T
7535 contig00002 2020 T 2.0 0 5 Tx2 low_depth T
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11006 contig00003 1959 A 0.0 0 5 low_depth A
11007 contig00003 1960 G 0.0 0 5 low_depth G
11008 contig00003 1961 G 0.0 0 5 low_depth G
11009 contig00003 1962 A 0.0 0 5 low_depth A
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11011 contig00003 1964 G 0.0 0 5 low_depth G
11012 contig00003 1965 T 0.0 0 5 low_depth T
11013 contig00003 1966 A 0.0 0 5 low_depth A
11014 contig00003 1967 T 0.0 0 5 low_depth T
11015 contig00003 1968 T 0.0 0 5 low_depth T
11016 contig00003 1969 T 0.0 0 5 low_depth T
11017 contig00003 1970 G 0.0 0 5 low_depth G
11018 contig00003 1971 T 0.0 0 5 low_depth T
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11020 contig00003 1973 G 1.0 0 5 Gx1 low_depth G
11021 contig00003 1974 A 1.0 0 5 Ax1 low_depth A
11022 contig00003 1975 A 1.0 0 5 Ax1 low_depth A
11023 contig00003 1976 A 1.0 0 5 Ax1 low_depth A
11024 contig00003 1977 A 1.0 0 5 Ax1 low_depth A
11025 contig00003 1978 A 1.0 0 5 Ax1 low_depth A
11026 contig00003 1979 C 1.0 0 5 Cx1 low_depth C
11027 contig00003 1980 T 1.0 0 5 Tx1 low_depth T
11028 contig00003 1981 T 1.0 0 5 Tx1 low_depth T
11029 contig00003 1982 G 1.0 0 5 Gx1 low_depth G
11030 contig00003 1983 A 1.0 0 5 Ax1 low_depth A
11031 contig00003 1984 T 1.0 0 5 Tx1 low_depth T
11032 contig00003 1985 A 1.0 0 5 Ax1 low_depth A
11033 contig00003 1986 A 1.0 0 5 Ax1 low_depth A
11034 contig00003 1987 A 1.0 0 5 Ax1 low_depth A
11035 contig00003 1988 T 1.0 0 5 Tx1 low_depth T
11036 contig00003 1989 A 1.0 0 5 Ax1 low_depth A
11037 contig00003 1990 A 1.0 0 5 Ax1 low_depth A
11038 contig00003 1991 G 1.0 0 5 Gx1 low_depth G
11039 contig00003 1992 A 1.0 0 5 Ax1 low_depth A
11040 contig00003 1993 A 1.0 0 5 Ax1 low_depth A
11041 contig00003 1994 A 1.0 0 5 Ax1 low_depth A
11042 contig00003 1995 A 1.0 0 5 Ax1 low_depth A
11043 contig00003 1996 G 1.0 0 5 Gx1 low_depth G
11044 contig00003 1997 A 1.0 0 5 Ax1 low_depth A
11045 contig00003 1998 C 1.0 0 5 Cx1 low_depth C
11046 contig00003 1999 T 1.0 0 5 Tx1 low_depth T
11047 contig00003 2000 G 1.0 0 5 Gx1 low_depth G
11048 contig00003 2001 C 1.0 0 5 Cx1 low_depth C
11049 contig00003 2002 T 1.0 0 5 Tx1 low_depth T
11050 contig00003 2003 C 1.0 0 5 Cx1 low_depth C
11051 contig00003 2004 G 1.0 0 5 Gx1 low_depth G
11052 contig00003 2005 T 1.0 0 5 Tx1 low_depth T
11053 contig00003 2006 A 1.0 0 5 Ax1 low_depth A
11054 contig00003 2007 C 1.0 0 5 Cx1 low_depth C
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11057 contig00003 2010 G 1.0 0 5 Gx1 low_depth G
11058 contig00003 2011 C 1.0 0 5 Cx1 low_depth C
11059 contig00003 2012 A 1.0 0 5 Ax1 low_depth A
11060 contig00003 2013 G 1.0 0 5 Gx1 low_depth G
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11062 contig00003 2015 C 1.0 0 5 Cx1 low_depth C
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11065 contig00003 2018 T 1.0 0 5 Tx1 low_depth T
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14409 contig00004 2135 T 0.0 0 5 low_depth T
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14414 contig00004 2140 T 0.0 0 5 low_depth T
14415 contig00004 2141 T 0.0 0 5 low_depth T
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14417 contig00004 2143 G 0.0 0 5 low_depth G
14418 contig00004 2144 T 0.0 0 5 low_depth T
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14421 contig00004 2147 T 0.0 0 5 low_depth T
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14424 contig00004 2150 T 1.0 0 5 Tx1 low_depth T
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14432 contig00004 2158 T 1.0 0 5 Tx1 low_depth T
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14435 contig00004 2161 C 1.0 0 5 Cx1 low_depth C
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14451 contig00004 2177 T 1.0 0 5 Tx1 low_depth T
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14454 contig00004 2180 C 1.0 0 5 Cx1 low_depth C
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14546 contig00004 2272 T 1.0 0 5 Tx1 low_depth T
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14582 contig00004 2308 T 2.0 0 5 Tx2 low_depth T
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