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comparison macro.xml @ 0:0c094ece2c73 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/polypolish commit 95f351736787f04c65e830cd9daf9c9c8521893a
author iuc
date Thu, 22 Sep 2022 07:50:58 +0000
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children df205c588e6f
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-1:000000000000 0:0c094ece2c73
1
2 <macros>
3 <token name="@TOOL_VERSION@">0.5.0</token>
4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@PROFILE@">21.05</token>
6 <token name="@THREADS@">\${GALAXY_SLOTS:-7}</token>
7 <xml name="version_command">
8 <version_command><![CDATA[polypolish -V]]></version_command>
9 </xml>
10 <xml name="xrefs">
11 <xrefs>
12 <xref type='bio.tools'>Polypolish</xref>
13 </xrefs>
14 </xml>
15 <xml name="requirements">
16 <requirements>
17 <requirement type="package" version="@TOOL_VERSION@">polypolish</requirement>
18 <requirement type="package" version="1.13">samtools</requirement>
19 </requirements>
20 </xml>
21 <xml name="citations">
22 <citations>
23 <citation type="doi">10.1371/journal.pcbi.1009802</citation>
24 </citations>
25 </xml>
26 <!-- Filter option of polypolish -->
27 <xml name="filter_option">
28 <conditional name="insert_filter">
29 <param name="filter_select" type="select" label="Filter by insert size ? [recommanded]"
30 help="Exclude some alignments based on their insert size. It reduce the number of excessive alignments,
31 particularly near the edges of repeat sequences">
32 <option value="filter" selected="true">Filter by insert size</option>
33 <option value="non_filter"> No filtering step</option>
34 </param>
35 <when value="filter">
36 <param name="low" argument="--low" type="float" min="0" value="0.1" label="Low percentile threshold" help="Select the lower value to remove [default: 0.1]"/>
37 <param name="high" argument="--high" type="float" min="0" value="99.9" label="High percentile threshold" help="Select the lower value to remove [default: 99.9]"/>
38 </when>
39 <when value="non_filter">
40 </when>
41 </conditional>
42 </xml>
43 </macros>