diff test-data/stats.log @ 10:c7d38dcbf02d draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit e4f567640710d5f8447b31bd6d78e7fb2d8fe401"
author iuc
date Sun, 19 Dec 2021 15:52:45 +0000
parents 303123b30425
children
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--- a/test-data/stats.log	Thu Dec 02 16:19:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,40 +0,0 @@
-PLINK v1.90p 64-bit (16 Jun 2020)
-Options in effect:
-  --bfile plink_input/plink_input
-  --check-sex ycount 0.2 0.8 10 200
-  --freq
-  --hardy
-  --het
-  --make-bed
-  --missing
-  --out plink_output/plink_output
-
-Hostname: p-body.local
-Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/89/working
-Start time: Tue Sep 15 10:53:23 2020
-
-Random number seed: 1600192403
-32768 MB RAM detected; reserving 16384 MB for main workspace.
-50 variants loaded from .bim file.
-200 people (0 males, 200 females) loaded from .fam.
-200 phenotype values loaded from .fam.
-Using 1 thread (no multithreaded calculations invoked).
-Before main variant filters, 200 founders and 0 nonfounders present.
-Calculating allele frequencies... done.
---freq: Allele frequencies (founders only) written to
-plink_output/plink_output.frq .
---missing: Sample missing data report written to
-plink_output/plink_output.imiss, and variant-based missing data report written
-to plink_output/plink_output.lmiss.
---hardy: Writing Hardy-Weinberg report (founders only) to
-plink_output/plink_output.hwe ... done.
-50 variants and 200 people pass filters and QC.
-Among remaining phenotypes, 101 are cases and 99 are controls.
-Warning: No Y chromosome data for --check-sex ycount.
---check-sex: 26 Xchr and 0 Ychr variant(s) scanned, 31 problems detected.
-Report written to plink_output/plink_output.sexcheck .
---make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim +
-plink_output/plink_output.fam ... done.
---het: 24 variants scanned, report written to plink_output/plink_output.het .
-
-End time: Tue Sep 15 10:53:23 2020