Mercurial > repos > iuc > plasmidfinder

view test-data/test_2/data_test2.json @ 4:65b333eed5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents f52df366f012
children
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{"plasmidfinder": {"user_input": {"filename(s)": ["/tmp/tmp1yi7ks0w/files/0/e/3/dataset_0e36e86f-0bbd-4a32-940e-8e30997c8d02.dat"], "method": "kma", "file_format": "fastq"}, "run_info": {"date": "10.02.2026", "time": "15:20:44"}, "results": {"Gram Positive": {"Inc18": {"rep14a_2_ORF1(pKQ10)_EFU01917": {"plasmid": "rep14a", "identity": 99.5, "HSP_length": 402, "template_length": 402, "position_in_ref": "1..403", "contig_name": "NA", "positions_in_contig": "NA..NA", "note": "ORF1(pKQ10)", "accession": "EFU01917", "coverage": 100.0, "hit_id": "rep14a_2_ORF1(pKQ10)_EFU01917"}}, "Rep3": "No hit found", "Rep_trans": {"rep14a_2_ORF1(pKQ10)_EFU01917": {"plasmid": "rep14a", "identity": 99.5, "HSP_length": 402, "template_length": 402, "position_in_ref": "1..403", "contig_name": "NA", "positions_in_contig": "NA..NA", "note": "ORF1(pKQ10)", "accession": "EFU01917", "coverage": 100.0, "hit_id": "rep14a_2_ORF1(pKQ10)_EFU01917"}}}}}}