Mercurial > repos > iuc > plasmidfinder

comparison plasmidfinder.xml @ 4:65b333eed5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents e9813d6ac5ab
children
comparison
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3:e9813d6ac5ab 4:65b333eed5c2
76 <tests> 76 <tests>
77 <!--test_1 with default value and all output files for contigs --> 77 <!--test_1 with default value and all output files for contigs -->
78 <test expect_num_outputs="6"> 78 <test expect_num_outputs="6">
79 <section name="input"> 79 <section name="input">
80 <param name="input_file" value="contigs.fasta"/> 80 <param name="input_file" value="contigs.fasta"/>
81 <param name="input_type" value="genome"/>
82 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/> 81 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
83 </section> 82 </section>
84 <section name="output_files"> 83 <section name="output_files">
85 <param name="output_selection" value="data_json,hit_fasta,plasmid_fasta,result_tsv,result_txt,logfile"/> 84 <param name="output_selection" value="data_json,hit_fasta,plasmid_fasta,result_tsv,result_txt,logfile"/>
86 </section> 85 </section>
93 </test> 92 </test>
94 <!--test_2 with default value and for fastq file --> 93 <!--test_2 with default value and for fastq file -->
95 <test expect_num_outputs="4"> 94 <test expect_num_outputs="4">
96 <section name="input"> 95 <section name="input">
97 <param name="input_file" value="data.fastq.gz"/> 96 <param name="input_file" value="data.fastq.gz"/>
98 <param name="input_type" value="raw"/>
99 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/> 97 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
100 </section> 98 </section>
101 <section name="output_files"> 99 <section name="output_files">
102 <param name="output_selection" value="data_json,result_tsv,result_txt,logfile"/> 100 <param name="output_selection" value="data_json,result_tsv,result_txt,logfile"/>
103 </section> 101 </section>
108 </test> 106 </test>
109 <!--test_3 with default value and for fastq file --> 107 <!--test_3 with default value and for fastq file -->
110 <test expect_num_outputs="3"> 108 <test expect_num_outputs="3">
111 <section name="input"> 109 <section name="input">
112 <param name="input_file" value="contigs.fasta"/> 110 <param name="input_file" value="contigs.fasta"/>
113 <param name="input_type" value="genome"/>
114 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/> 111 <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
115 </section> 112 </section>
116 <section name="options"> 113 <section name="options">
117 <param name="min_cov" value="0.2" /> 114 <param name="min_cov" value="0.2" />
118 <param name="threshold" value="0.6"/> 115 <param name="threshold" value="0.6"/>