annotate test-data/assembly.fasta @ 0:368de2f9f50f draft default tip

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author iuc
date Thu, 08 Dec 2016 13:03:44 -0500
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0
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iuc
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1 >contig_1
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iuc
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2 CGATTAACCATGTGTACAACATGACCAATTATGGCCGATCTTGCTTGTTCAGGAGTCTCA
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iuc
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3 CTCATCATTCCAAAATCAAGAAAAGCAAGCTTCCCGTCAGGTGTAGCTAAGAGATTCCCT
368de2f9f50f Uploaded
iuc
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4 GGGTGAGGATCTGCATGAAAATAGCCGTACTCAAGCAGCTGTCGAAGACTGCACTGTATG
368de2f9f50f Uploaded
iuc
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5 CCGGTATTCACCAGATCCAGAACACTGAGCCCTTGACTCTCAACGGCATCTTGCTCATTT
368de2f9f50f Uploaded
iuc
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6 AATTTAACACCTTCAACCCACTCCATTGTTAGCACCTTTCCACTCGTGTAATCCCAGAAA
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iuc
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7 ATATCTGGGACAAGGATATCTTCCTTGTCTCCATATAATTTTTTAA
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iuc
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8 >contig_2
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iuc
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9 CCTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCC
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iuc
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10 GGAAGATGCAGCAGACGACTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCAT
368de2f9f50f Uploaded
iuc
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11 ACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACCTCATGTTGCTTGGAATGGGGCC
368de2f9f50f Uploaded
iuc
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12 CGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAATG
368de2f9f50f Uploaded
iuc
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13 GGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCC
368de2f9f50f Uploaded
iuc
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14 GATGATCAACTCGGCTTCGGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTAC
368de2f9f50f Uploaded
iuc
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15 AACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGCCGGGTGAGACTCCTTTGCCTTG
368de2f9f50f Uploaded
iuc
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16 TACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCACA
368de2f9f50f Uploaded
iuc
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17 ACTGTTAAATTATGTGCGCTTTGATGATTAAAAACACGGGGTAATTGAACTCAAGGGATG
368de2f9f50f Uploaded
iuc
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18 GTTGAGAATTGTAATATTTCTGTAAGTGTCGGGGGATGGTTGAAATGCTTTTTATTATGA
368de2f9f50f Uploaded
iuc
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19 AGTGTTAAAATGTAAGATAAA
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iuc
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20 >contig_3
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iuc
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21 CGGGGGCAAGGTTTACATGAAAGTACATCTACAGGACCTAGATAAGCATCATCACCTGAC
368de2f9f50f Uploaded
iuc
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22 AAAAAGCCATACATAGTAACACTTGCTAGTTGATCTGTGAAAATGGTGCACGAGTCGTAA
368de2f9f50f Uploaded
iuc
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23 CAGACGGCATTAGTTCCTTTCCTGTAACAGCAGATTCGTATGAATGGTTTTCTCGAAATT
368de2f9f50f Uploaded
iuc
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24 CTTCTTCAAGTGCATCTATAGGCATGGCACGAAGTGACTCTATTGTGCCTTTGCTGGGAA
368de2f9f50f Uploaded
iuc
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25 TATCCGGCTCGCTCCTAACTGGCGTGGACCCTGTAGGCTCGTAATCCATGTATTTTTGCC
368de2f9f50f Uploaded
iuc
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26 TGAAAGTATCATTCGTGTGCTGTTCGATACAGGATACCTGCTGGGAATGATCTCTCTTAA
368de2f9f50f Uploaded
iuc
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27 GGTTCTCAATTGTTTCTGAATGAGCTCTAGCAGTTGTCAGAATTTCAGAAACAGATGCCT
368de2f9f50f Uploaded
iuc
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28 TCTCCTGCTCTGACAAGCCAGCAACAACAACTCCTTCATCCACA
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iuc
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29 >contig_4
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iuc
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30 CTGACGATGTTCATATTCATGCCACTCTAAATGTATGCCATCCATGTTGAGGAGAAATGC
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iuc
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31 TTGTGTAAAGAAGAAACTGGAGTCAAGCGGTCCCGGTTTTACAGTTGAACGTTGCTCTAA
368de2f9f50f Uploaded
iuc
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32 ATTAGTCAAAGTACCCGACTACCCGCTCATCAAACTGGCGAGCTCGTTTTCCTCGCCGCC
368de2f9f50f Uploaded
iuc
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33 CTACTCGGTGTCTTGGCGGGGCACATGGGGGTGGCGTGTGGCGTGCGGGGATGCGACAAC
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iuc
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34 ATCATAAATTCATAATCGAAGG
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iuc
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35 >contig_5
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iuc
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36 GTGAGAGTGTCGCCTTTTCCATGCTACCCCTTTCCAGATCTGACTTGTTCGAACCTTCCA
368de2f9f50f Uploaded
iuc
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37 TCATCCGGTTCGACGTCAGCAGTCGGTCCTTCTTCTCCAAGCACGAGAGCAGACGGTGCG
368de2f9f50f Uploaded
iuc
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38 AGAGCGAGCAAAGACTCGCCTGCCGCGCCTCTCGTGACCTGGCTCGCATCTCCAGGATTC
368de2f9f50f Uploaded
iuc
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39 ATGGCTCCTTAGCTCGCCCTTCTTCGATACTTCGCTAGACGCCCGAGGACGTCATCGAAG
368de2f9f50f Uploaded
iuc
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40 GCGAGGGTCGGCACAACGGAGTGCTCCTTGCATGATGTCGGGGCCTGGCATCACGCGGCA
368de2f9f50f Uploaded
iuc
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41 TCGGCCAAATCGTCCCTCTCGACGTGCGTCACGGAGAGGGCCGAGCGCCGGGACGACCGC
368de2f9f50f Uploaded
iuc
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42 GTGGAAGAGCCCGCGGGATGCGGGATCCCGCTTGACGTGTGTTTGTGGCGGACCACCG
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iuc
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43 >contig_6
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iuc
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44 TATAACAATTCAAAATATTCCTATGAAAACCAAGACCAGAGGCAACACCGGTATAACCAA
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iuc
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45 AGCCAGAGGCAATATCCCTTTATTCTTCGGGAACAGAAAAATACACGATATGCTACAGAC
368de2f9f50f Uploaded
iuc
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46 AAAAAAATAAATCCAAACCATTCTTCTGTGCATAAACATTGTAAAAGTTTATTAGACCGC
368de2f9f50f Uploaded
iuc
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47 TGTAAAACTCGTAAATGAAATCCCTGGCAATTGAATCTGTTAAACCTGCTCC
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iuc
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48 >contig_7
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iuc
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49 GAGAATGAGTGGTCTGGGGCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAAT
368de2f9f50f Uploaded
iuc
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50 AAATCCAATGAAAACGGAACCGGAACTTTTGAAGAACTGCAACAATTGTTCGATGAAATG
368de2f9f50f Uploaded
iuc
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51 TTTCAGAGCGACATCGAGTCCTTCAATGGTTGTTCTTCATCATCCAATGAAACATGTAGC
368de2f9f50f Uploaded
iuc
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52 AACTCGAACAAGAGGAATTCCATTGAGTCGAGCTCGGCTAATTTCAGACCCGAAAATGCG
368de2f9f50f Uploaded
iuc
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53 AAACGAAAGCGGCGAGATTAGCGGGAAGAAGAATACTAGGAAAGGTAAAGGTGACG
368de2f9f50f Uploaded
iuc
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54 >contig_8
368de2f9f50f Uploaded
iuc
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55 TGGCATGAAGTCGGCTCGACTCGTGCCCGCTCGTCTATAGACGAATTGAGCTAGATTCAC
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iuc
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56 TCATTCCATGAACTCGACTCGTTCATGAGTCGGCTCGTAGTTGTCCGGACTCGCTCCATG
368de2f9f50f Uploaded
iuc
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57 GCCAGCTCTACAACAGACTGCCTGTATGTAGATGATTGTATTGATTTGTTCTTCTCTTGT
368de2f9f50f Uploaded
iuc
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58 TTAAATCCAACCAAATATCAACATGATATTTGCAATTTC
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iuc
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59 >contig_9
368de2f9f50f Uploaded
iuc
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60 ACTTCGGTTAAAGGCAGATGAGGAGGCACAATGTTTGAATCAGATGCAGCGTATCATTTT
368de2f9f50f Uploaded
iuc
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61 TGATGAAATTATGGAGCATGTGGAGTTAGAAAAGGGGGGCTTCTATTTCGTATATCGCCC
368de2f9f50f Uploaded
iuc
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62 TGGGGGCAACGGAAAGACCTTGTGGTTGGCTATTATCTCAAAACTGAGAAGCGAGGGTAG
368de2f9f50f Uploaded
iuc
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63 AATAGTTCTCGCAGTGGCTTCATCAGGTATAGCATTGCTTTTGGTTGAGGGTGGTAGAAC
368de2f9f50f Uploaded
iuc
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64 AGCCCATTCTCGATTTAAAATACCCATAGATGTCAATGAATATAACAATTGTGAAATTAA
368de2f9f50f Uploaded
iuc
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65 ACAGAACATCTACCTCGCTGAACTTATATGTCACACCAATTTGGTCATTTGGGATGAGGC
368de2f9f50f Uploaded
iuc
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66 ACCTATGACTCAATATTTTGTCTTTGAGGCGGTTGA
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iuc
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67 >contig_10
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iuc
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68 GGGGCATTGCCGCCGATTAATTCGAGCGCGAGGTTTCGCGTATCAGGCGGAATTGGGATT
368de2f9f50f Uploaded
iuc
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69 TGGCGCCACAAAGAGCGCCACCTATGATTTCTGTGGCGGACGACTTCACGAACTCGGACG
368de2f9f50f Uploaded
iuc
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70 GGACTATCTAACCAATCTTCCAAGTTCATTGCGACATCAGTATAAGGGCGTGATGAAGGT
368de2f9f50f Uploaded
iuc
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71 TCGCTATCGTCGCTTGAGTTATTGATGGGGCCCAAATTGAGATCGAGGTTCATTGTAGTG
368de2f9f50f Uploaded
iuc
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72 GTGTTCTCTTCTGCCATTTGAGAATTTCACAAGTTCTAACAAACGAAAACGCAAATCTTC
368de2f9f50f Uploaded
iuc
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73 GGGACTAATATGCAGAATTTCCCTAAATAGAAGGGGTTTAAAA