Mercurial > repos > iuc > pizzly
diff tool-data/all_fasta.loc.sample @ 1:3658798275bd draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
| author | iuc |
|---|---|
| date | Tue, 03 Oct 2017 18:04:29 -0400 |
| parents | 6095717c185d |
| children |
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--- a/tool-data/all_fasta.loc.sample Wed Sep 13 22:40:39 2017 -0400 +++ b/tool-data/all_fasta.loc.sample Tue Oct 03 18:04:29 2017 -0400 @@ -1,7 +1,6 @@ -#This file lists the locations and dbkeys of all the fasta files +#This file lists the locations and dbkeys of all the genome and transcriptome fasta files #under the "genome" directory (a directory that contains a directory -#for each build). The script extract_fasta.py will generate the file -#all_fasta.loc. This file has the format (white space characters are +#for each build. This file has the format (white space characters are #TAB characters): # #<unique_build_id> <dbkey> <display_name> <file_path> @@ -9,10 +8,11 @@ #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa -#hg38canon hg38 Human (Homo sapiens): hg38 Canonical /path/to/genome/hg38/hg38canon.fa -#hg38full hg38 Human (Homo sapiens): hg38 Full /path/to/genome/hg38/hg38full.fa -# +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +#hg19full.87 hg19 Human (Homo sapiens): hg19 Full Trans v87 /path/to/genome/hg19/hg19full.cdna.all.fa + #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, -#such as with hg38 above. +#such as with hg19 above. #