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comparison pilon.xml @ 5:ea4a63fafc01 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pilon commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 07:59:20 +0000
parents 57cfa19f44ba
children
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4:57cfa19f44ba 5:ea4a63fafc01
1 <tool id="pilon" name="pilon" version="1.20.1"> 1 <tool id="pilon" name="pilon" version="1.20.1">
2 <description>An automated genome assembly improvement and variant detection tool</description> 2 <description>An automated genome assembly improvement and variant detection tool</description>
3 <xrefs>
4 <xref type="bio.tools">pilon</xref>
5 </xrefs>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="1.20">pilon</requirement> 7 <requirement type="package" version="1.20">pilon</requirement>
5 </requirements> 8 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
7 #if $auto_selection.auto_enabled == "yes" 10 #if $auto_selection.auto_enabled == "yes"
8 #for $bamfile in $auto_selection.bam 11 #for $bamfile in $auto_selection.bam
9 ln -f -s "$bamfile" "\$(basename $bamfile)" && 12 ln -f -s "$bamfile" "\$(basename $bamfile)" &&