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comparison pear.xml @ 8:bb0164f44f3c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear commit bfa8bda732de882f6fa5f5375f8468ad229cceea
author iuc
date Wed, 09 Nov 2016 06:29:57 -0500
parents 5bbdf641a2d5
children 5d2d653c7cb0
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7:5bbdf641a2d5 8:bb0164f44f3c
20 #else: 20 #else:
21 --phred-base 33 21 --phred-base 33
22 #end if 22 #end if
23 #else 23 #else
24 ## prepare collection 24 ## prepare collection
25 -f $library.input_collection.forward 25 -f "$library.input_collection.forward"
26 -r $library.input_collection.reverse 26 -r "$library.input_collection.reverse"
27 #if $library.input_collection.forward.is_of_type( 'fastqillumina' ): 27 #if $library.input_collection.forward.is_of_type( 'fastqillumina' ):
28 --phred-base 64 28 --phred-base 64
29 #else: 29 #else:
30 --phred-base 33 30 --phred-base 33
31 #end if 31 #end if
143 </test> 143 </test>
144 </tests> 144 </tests>
145 <help> 145 <help>
146 <![CDATA[ 146 <![CDATA[
147 147
148
149 **What it does** 148 **What it does**
150 149
151 PEAR_ is an ultrafast, memory-efficient and highly accurate pair-end read merger. 150 PEAR_ is an ultrafast, memory-efficient and highly accurate pair-end read merger.
152 PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment 151 PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment
153 size as input. In addition, it implements a statistical test for minimizing false-positive results. 152 size as input. In addition, it implements a statistical test for minimizing false-positive results.