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comparison pe_histogram.xml @ 5:551f36b118b1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pe_histogram commit d7e29bd902ec805b3e8d68c38ae446ec25f9cb43
author iuc
date Fri, 04 Oct 2024 09:11:24 +0000
parents 784273cfcebc
children
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4:784273cfcebc 5:551f36b118b1
1 <tool id="pe_histogram" name="Paired-end histogram" version="1.0.1"> 1 <tool id="pe_histogram" name="Paired-end histogram" version="1.0.2" profile="23.0">
2 <description>of insert size frequency</description> 2 <description>of insert size frequency</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="11.0.1">openjdk</requirement> 4 <requirement type="package" version="11.0.1">openjdk</requirement>
5 <requirement type="package" version="1">fonts-conda-ecosystem</requirement> 5 <requirement type="package" version="1">fonts-conda-ecosystem</requirement>
6 </requirements> 6 </requirements>
24 <param name="input_bam" type="data" format="bam" label="BAM file" /> 24 <param name="input_bam" type="data" format="bam" label="BAM file" />
25 <param name="lower_limit" type="integer" value="" optional="true" min="0" label="Lower bp limit (optional)" help="The lower bp limit on insert size for calculating the histogram."/> 25 <param name="lower_limit" type="integer" value="" optional="true" min="0" label="Lower bp limit (optional)" help="The lower bp limit on insert size for calculating the histogram."/>
26 <param name="upper_limit" type="integer" value="" optional="true" min="0" label="Upper bp limit (optional)" help="The upper bp limit on insert size for calculating the histogram." /> 26 <param name="upper_limit" type="integer" value="" optional="true" min="0" label="Upper bp limit (optional)" help="The upper bp limit on insert size for calculating the histogram." />
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data name="output1" format="png" /> 29 <data name="output1" format="png" label="${tool.name} on ${on_string}: Plot"/>
30 <data name="output2" format="tabular" /> 30 <data name="output2" format="tabular" label="${tool.name} on ${on_string}: Table" />
31 </outputs> 31 </outputs>
32 <tests> 32 <tests>
33 <test> 33 <test>
34 <param name="input_bam" value="input.bam" ftype="bam" /> 34 <param name="input_bam" value="input.bam" ftype="bam" />
35 <output name="output1" file="output1.png" ftype="png" compare="sim_size" /> 35 <output name="output1" file="output1.png" ftype="png" compare="sim_size" />