Mercurial > repos > iuc > pathview

comparison pathview.xml @ 3:e9e98c810b7f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pathview commit f21f5effc122e992ed977bc42b27f9520f59a33b"
author iuc
date Fri, 08 Apr 2022 15:36:19 +0000
parents 7ae319cf912b
children 63af34544358
comparison
equal deleted inserted replaced
2:7ae319cf912b 3:e9e98c810b7f
1 <tool id="pathview" name="Pathview" version="@VERSION@+@GALAXY_VERSION@"> 1 <tool id="pathview" name="Pathview" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
2 <description>for pathway based data integration and visualization</description> 2 <description>for pathway based data integration and visualization</description>
3 <xrefs> 3 <xrefs>
4 <xref type="bio.tools">pathview</xref> 4 <xref type="bio.tools">pathview</xref>
5 </xrefs> 5 </xrefs>
6 <macros> 6 <macros>
7 <token name="@VERSION@">1.24.0</token> 7 <token name="@TOOL_VERSION@">1.24.0</token>
8 <token name="@GALAXY_VERSION@">galaxy0</token> 8 <token name="@VERSION_SUFFIX@">2</token>
9 </macros> 9 </macros>
10 <requirements> 10 <requirements>
11 <requirement type="package" version="@VERSION@">bioconductor-pathview</requirement> 11 <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement>
12 <requirement type="package" version="3.8.2">bioconductor-org.ag.eg.db</requirement> 12 <requirement type="package" version="3.8.2">bioconductor-org.ag.eg.db</requirement>
13 <requirement type="package" version="3.8.2">bioconductor-org.at.tair.db</requirement> 13 <requirement type="package" version="3.8.2">bioconductor-org.at.tair.db</requirement>
14 <requirement type="package" version="3.8.2">bioconductor-org.bt.eg.db</requirement> 14 <requirement type="package" version="3.8.2">bioconductor-org.bt.eg.db</requirement>
15 <requirement type="package" version="3.8.2">bioconductor-org.ce.eg.db</requirement> 15 <requirement type="package" version="3.8.2">bioconductor-org.ce.eg.db</requirement>
16 <requirement type="package" version="3.8.2">bioconductor-org.cf.eg.db</requirement> 16 <requirement type="package" version="3.8.2">bioconductor-org.cf.eg.db</requirement>
83 <param name="one_id" type="text" label="KEGG pathway" help="KEGG pathway ID with 5 digits and without the 3 letter KEGG species code."> 83 <param name="one_id" type="text" label="KEGG pathway" help="KEGG pathway ID with 5 digits and without the 3 letter KEGG species code.">
84 <validator type="regex" message="It should be the 5 digits of the KEGG pathway ID.">^(?:\d\d\d\d\d)?$</validator> 84 <validator type="regex" message="It should be the 5 digits of the KEGG pathway ID.">^(?:\d\d\d\d\d)?$</validator>
85 </param> 85 </param>
86 </when> 86 </when>
87 <when value="multiple"> 87 <when value="multiple">
88 <param name="tabular" type="data" format="tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/> 88 <param name="tabular" type="data" format="txt,tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/>
89 <param name="header" type="boolean" checked="true" label="Does the file have header (a first line with column names)?"/> 89 <param name="header" type="boolean" checked="true" label="Does the file have header (a first line with column names)?"/>
90 </when> 90 </when>
91 </conditional> 91 </conditional>
92 <param name="species" type="select" label="Species to use"> 92 <param name="species" type="select" label="Species to use">
93 <option value="aga">Anopheles</option> 93 <option value="aga">Anopheles</option>