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changeset 3:1de68b7a1e3f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panta commit 6adea21f21f7445e92568579096b7c7ea4781e50
author iuc
date Wed, 22 Oct 2025 15:47:16 +0000
parents 137d00a9a598
children
files macros.xml panta.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Oct 13 07:59:25 2025 +0000
+++ b/macros.xml	Wed Oct 22 15:47:16 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.0.1</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">25.0</token>
     <xml name="requirements">
         <requirements>
--- a/panta.xml	Mon Oct 13 07:59:25 2025 +0000
+++ b/panta.xml	Wed Oct 22 15:47:16 2025 +0000
@@ -127,10 +127,10 @@
         <data format="txt" name="summary_statistics" label="${tool.name} on ${on_string} : Summary Statistics" from_work_dir="out/summary_statistics.txt"/>
         
         <!--Alignment outputs -->
-        <data format="txt" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz">
+        <data format="fasta" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz">
             <filter> ['alignment'] != 'None' </filter>
         </data>
-        <data format="txt" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna">
+        <data format="fasta" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna">
             <filter> ['alignment'] != 'None' </filter>
         </data>
     </outputs>
@@ -400,12 +400,12 @@
                     <has_n_lines n="6" delta='3'/>
                 </assert_contents>
             </output>
-            <output name="core_gene_alignment" ftype="txt">
+            <output name="core_gene_alignment" ftype="fasta">
                 <assert_contents>
                     <has_n_lines n="96130" delta='3'/>
                 </assert_contents>
             </output>
-            <output name="pan_genome_reference" ftype="txt">
+            <output name="pan_genome_reference" ftype="fasta">
                 <assert_contents>
                     <has_text text="AAAGGCGTTTGGTATATAACGATGCCAG"/>
                     <has_n_lines n="84292" delta='3'/>