Mercurial > repos > iuc > pangolin

diff pangolin.xml @ 13:25470784f134 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 402a11a20ec3f724dfe0b1a4bc60d806e77c1b3d"
author iuc
date Fri, 19 Nov 2021 17:09:03 +0000
parents e000e9c0521b
children 1db21543b8ff
line wrap: on
line diff
--- a/pangolin.xml	Fri Oct 22 14:32:03 2021 +0000
+++ b/pangolin.xml	Fri Nov 19 17:09:03 2021 +0000
@@ -1,14 +1,10 @@
-<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01">
+<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
     <description>Phylogenetic Assignment of Outbreak Lineages</description>
     <macros>
-        <token name="@TOOL_VERSION@">3.1.14</token>
+        <token name="@TOOL_VERSION@">3.1.16</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
-	<!-- the scorpio requirement is because pangolin got an update to use scorpio 0.3.13 (to detect AY.4.2 better) 
-             while still using the pangolin 3.1.14 code. when pangolin gets updated past 3.1.14 this requirement can
-             be removed -->
-	<requirement type="package" version="0.3.13">scorpio</requirement>
         <requirement type="package" version="0.23.0">csvtk</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
@@ -92,7 +88,7 @@
             </conditional>
             <output name="output1" ftype="tabular">
                 <assert_contents>
-                    <has_text_matching expression="B\.1\.1\t0\.0" />
+                    <has_text_matching expression="B\.1\.1\t\d\.\d" />
                     <has_text text="passed_qc" />
                     <has_n_lines n="1" />
                 </assert_contents>
@@ -107,7 +103,7 @@
             </conditional>
             <output name="output1" ftype="tabular">
                 <assert_contents>
-                    <has_text_matching expression="B\.1\.1.*\t0\.0\t*PUSHER" />
+                    <has_text_matching expression="B\.1\.1.*\t\d\.\d\t*PUSHER" />
                     <has_text text="passed_qc" />
                     <has_n_lines n="1" />
                 </assert_contents>
@@ -121,7 +117,7 @@
             </conditional>
             <output name="output1" ftype="tabular">
                 <assert_contents>
-                    <has_text_matching expression="B\.1\.1\t0\.0" />
+                    <has_text_matching expression="B\.1\.1\t\d\.\d" />
                     <has_text text="passed_qc" />
                     <has_n_lines n="1" />
                 </assert_contents>