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comparison pangolin.xml @ 30:5f736365108b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pangolin commit 2ca3f9ad1c61effb960c9ee627cd1b07c99a8b8f
author iuc
date Mon, 17 Nov 2025 12:56:52 +0000
parents f0fc9c4f00fe
children
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29:f0fc9c4f00fe 30:5f736365108b
1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy2" profile="21.09"> 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy2" profile="21.09">
2 <description>Phylogenetic Assignment of Outbreak Lineages</description> 2 <description>Phylogenetic Assignment of Outbreak Lineages</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">4.3.2</token> 4 <token name="@TOOL_VERSION@">4.3.4</token>
5 <token name="@PANGOLIN_DATA_VERSION@">1.26</token> 5 <token name="@PANGOLIN_DATA_VERSION@">1.26</token>
6 <token name="@CONSTELLATIONS_VERSION@">0.1.12</token> 6 <token name="@CONSTELLATIONS_VERSION@">0.1.12</token>
7 <!-- a regex describing the pangolin-data versions that this wrapper version 7 <!-- a regex describing the pangolin-data versions that this wrapper version
8 is backwards-compatible with; can be used with the min_pangolin_version 8 is backwards-compatible with; can be used with the min_pangolin_version
9 column of the pangolin_data and pangolin_assignment data table to offer 9 column of the pangolin_data and pangolin_assignment data table to offer
47 dependencies. 47 dependencies.
48 Wrapper updates are **explicitly encouraged** when new dependency 48 Wrapper updates are **explicitly encouraged** when new dependency
49 versions become available. Also, please check for updated dependencies 49 versions become available. Also, please check for updated dependencies
50 when updating the wrapper for other reasons. --> 50 when updating the wrapper for other reasons. -->
51 <requirement type="package" version="0.3.19">scorpio</requirement> 51 <requirement type="package" version="0.3.19">scorpio</requirement>
52 <requirement type="package" version="1.35">pangolin-data</requirement> 52 <requirement type="package" version="1.36">pangolin-data</requirement>
53 <requirement type="package" version="0.1.12">constellations</requirement> 53 <requirement type="package" version="0.1.12">constellations</requirement>
54 <requirement type="package" version="0.6.6">usher</requirement> 54 <requirement type="package" version="0.6.6">usher</requirement>
55 <requirement type="package" version="1.2.3">gofasta</requirement> 55 <requirement type="package" version="1.2.3">gofasta</requirement>
56 <requirement type="package" version="482">ucsc-fatovcf</requirement> 56 <requirement type="package" version="482">ucsc-fatovcf</requirement>
57 <requirement type="package" version="2.30">minimap2</requirement> 57 <requirement type="package" version="2.30">minimap2</requirement>