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comparison pangolin.xml @ 5:a4f59b43cba3 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 93a8521684d03889f607b8c43db5539d9a0de8d0"
author iuc
date Mon, 21 Jun 2021 16:14:18 +0000
parents 6b5a64c4cb34
children 3eb349ea33a6
comparison
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4:6b5a64c4cb34 5:a4f59b43cba3
1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01"> 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
2 <description>Phylogenetic Assignment of Outbreak Lineages</description> 2 <description>Phylogenetic Assignment of Outbreak Lineages</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">3.0.3</token> 4 <token name="@TOOL_VERSION@">3.1.4</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
8 <requirement type="package" version="0.22.0">csvtk</requirement> 8 <requirement type="package" version="0.22.0">csvtk</requirement>
9 </requirements> 9 </requirements>
98 <conditional name="db"> 98 <conditional name="db">
99 <param name="source" value="download" /> 99 <param name="source" value="download" />
100 </conditional> 100 </conditional>
101 <output name="output1" ftype="tabular"> 101 <output name="output1" ftype="tabular">
102 <assert_contents> 102 <assert_contents>
103 <has_text_matching expression="B.1.1.409\t\t*PUSHER" /> 103 <has_text_matching expression="B.1.1\t0.0\t*PUSHER" />
104 <has_text text="passed_qc" /> 104 <has_text text="passed_qc" />
105 <has_n_lines n="1" /> 105 <has_n_lines n="1" />
106 </assert_contents> 106 </assert_contents>
107 </output> 107 </output>
108 </test> 108 </test>