Mercurial > repos > iuc > pairtools_parse

comparison test-data/pairs_output_yaml.stats @ 0:3b5ee2bf3679 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
author iuc
date Sun, 22 Dec 2024 15:39:08 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3b5ee2bf3679
1 no_filter:
2 total: 592
3 total_unmapped: 4
4 total_single_sided_mapped: 147
5 total_mapped: 441
6 total_nodups: 441
7 cis: 441
8 pair_types:
9 UU: 405
10 NR: 119
11 MU: 21
12 UR: 19
13 RU: 17
14 MR: 6
15 MM: 4
16 NU: 1
17 cis_1kb+: 75
18 cis_2kb+: 72
19 cis_4kb+: 70
20 cis_10kb+: 67
21 cis_20kb+: 61
22 cis_40kb+: 61
23 summary:
24 frac_cis: 1.0
25 frac_cis_1kb+: 0.17006802721088435
26 frac_cis_2kb+: 0.16326530612244897
27 frac_cis_4kb+: 0.15873015873015872
28 frac_cis_10kb+: 0.15192743764172337
29 frac_cis_20kb+: 0.1383219954648526
30 frac_cis_40kb+: 0.1383219954648526
31 frac_dups: 0.0
32 complexity_naive: .nan
33 dist_freq_convergence:
34 convergence_dist: 421697
35 strands_w_max_convergence_dist: ++
36 convergence_rel_diff_threshold: 0.05
37 n_cis_pairs_below_convergence_dist:
38 ++: 25
39 --: 26
40 -+: 7
41 +-: 383
42 n_cis_pairs_below_convergence_dist_all_strands: 441
43 n_cis_pairs_above_convergence_dist_all_strands: 0
44 frac_cis_in_cis_below_convergence_dist:
45 ++: 0.05668934240362812
46 --: 0.05895691609977324
47 -+: 0.015873015873015872
48 +-: 0.8684807256235828
49 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0
50 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0
51 frac_total_mapped_in_cis_below_convergence_dist:
52 ++: 0.05668934240362812
53 --: 0.05895691609977324
54 -+: 0.015873015873015872
55 +-: 0.8684807256235828
56 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0
57 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0
58 frac_total_nodups_in_cis_below_convergence_dist:
59 ++: 0.05668934240362812
60 --: 0.05895691609977324
61 -+: 0.015873015873015872
62 +-: 0.8684807256235828
63 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0
64 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0
65 chrom_freq:
66 Test_seq/Test_seq: 441
67 dist_freq:
68 +-:
69 0: 0
70 1: 0
71 2: 0
72 3: 0
73 4: 0
74 6: 0
75 7: 0
76 10: 0
77 13: 0
78 18: 0
79 24: 0
80 32: 0
81 42: 7
82 56: 7
83 75: 2
84 100: 3
85 133: 2
86 178: 3
87 237: 57
88 316: 171
89 422: 113
90 562: 0
91 750: 1
92 1000: 0
93 1334: 1
94 1778: 0
95 2371: 1
96 3162: 0
97 4217: 0
98 5623: 0
99 7499: 2
100 10000: 1
101 13335: 1
102 17783: 1
103 23714: 0
104 31623: 0
105 42170: 0
106 56234: 2
107 74989: 1
108 100000: 1
109 133352: 2
110 177828: 3
111 237137: 1
112 316228: 0
113 421697: 0
114 562341: 0
115 749894: 0
116 1000000: 0
117 1333521: 0
118 1778279: 0
119 2371374: 0
120 3162278: 0
121 4216965: 0
122 5623413: 0
123 7498942: 0
124 10000000: 0
125 13335214: 0
126 17782794: 0
127 23713737: 0
128 31622777: 0
129 42169650: 0
130 56234133: 0
131 74989421: 0
132 100000000: 0
133 133352143: 0
134 177827941: 0
135 237137371: 0
136 316227766: 0
137 421696503: 0
138 562341325: 0
139 749894209: 0
140 1000000000: 0
141 -+:
142 0: 0
143 1: 0
144 2: 0
145 3: 0
146 4: 0
147 6: 0
148 7: 0
149 10: 0
150 13: 0
151 18: 0
152 24: 0
153 32: 0
154 42: 0
155 56: 0
156 75: 0
157 100: 0
158 133: 0
159 178: 0
160 237: 0
161 316: 0
162 422: 0
163 562: 0
164 750: 0
165 1000: 0
166 1334: 0
167 1778: 0
168 2371: 0
169 3162: 0
170 4217: 0
171 5623: 0
172 7499: 0
173 10000: 1
174 13335: 1
175 17783: 0
176 23714: 0
177 31623: 0
178 42170: 1
179 56234: 0
180 74989: 0
181 100000: 0
182 133352: 3
183 177828: 0
184 237137: 0
185 316228: 1
186 421697: 0
187 562341: 0
188 749894: 0
189 1000000: 0
190 1333521: 0
191 1778279: 0
192 2371374: 0
193 3162278: 0
194 4216965: 0
195 5623413: 0
196 7498942: 0
197 10000000: 0
198 13335214: 0
199 17782794: 0
200 23713737: 0
201 31622777: 0
202 42169650: 0
203 56234133: 0
204 74989421: 0
205 100000000: 0
206 133352143: 0
207 177827941: 0
208 237137371: 0
209 316227766: 0
210 421696503: 0
211 562341325: 0
212 749894209: 0
213 1000000000: 0
214 --:
215 0: 0
216 1: 0
217 2: 0
218 3: 0
219 4: 0
220 6: 0
221 7: 0
222 10: 0
223 13: 0
224 18: 0
225 24: 0
226 32: 0
227 42: 0
228 56: 0
229 75: 0
230 100: 0
231 133: 0
232 178: 0
233 237: 0
234 316: 0
235 422: 0
236 562: 0
237 750: 0
238 1000: 1
239 1334: 0
240 1778: 0
241 2371: 1
242 3162: 0
243 4217: 0
244 5623: 0
245 7499: 0
246 10000: 0
247 13335: 0
248 17783: 0
249 23714: 0
250 31623: 0
251 42170: 21
252 56234: 1
253 74989: 0
254 100000: 2
255 133352: 0
256 177828: 0
257 237137: 0
258 316228: 0
259 421697: 0
260 562341: 0
261 749894: 0
262 1000000: 0
263 1333521: 0
264 1778279: 0
265 2371374: 0
266 3162278: 0
267 4216965: 0
268 5623413: 0
269 7498942: 0
270 10000000: 0
271 13335214: 0
272 17782794: 0
273 23713737: 0
274 31622777: 0
275 42169650: 0
276 56234133: 0
277 74989421: 0
278 100000000: 0
279 133352143: 0
280 177827941: 0
281 237137371: 0
282 316227766: 0
283 421696503: 0
284 562341325: 0
285 749894209: 0
286 1000000000: 0
287 ++:
288 0: 0
289 1: 0
290 2: 0
291 3: 0
292 4: 0
293 6: 0
294 7: 0
295 10: 0
296 13: 0
297 18: 0
298 24: 0
299 32: 0
300 42: 0
301 56: 0
302 75: 0
303 100: 0
304 133: 0
305 178: 0
306 237: 0
307 316: 0
308 422: 0
309 562: 0
310 750: 0
311 1000: 0
312 1334: 0
313 1778: 1
314 2371: 0
315 3162: 0
316 4217: 0
317 5623: 1
318 7499: 0
319 10000: 1
320 13335: 0
321 17783: 0
322 23714: 0
323 31623: 0
324 42170: 10
325 56234: 2
326 74989: 1
327 100000: 4
328 133352: 3
329 177828: 2
330 237137: 0
331 316228: 0
332 421697: 0
333 562341: 0
334 749894: 0
335 1000000: 0
336 1333521: 0
337 1778279: 0
338 2371374: 0
339 3162278: 0
340 4216965: 0
341 5623413: 0
342 7498942: 0
343 10000000: 0
344 13335214: 0
345 17782794: 0
346 23713737: 0
347 31622777: 0
348 42169650: 0
349 56234133: 0
350 74989421: 0
351 100000000: 0
352 133352143: 0
353 177827941: 0
354 237137371: 0
355 316227766: 0
356 421696503: 0
357 562341325: 0
358 749894209: 0
359 1000000000: 0
360 chromsizes:
361 Test_seq: 450060