Mercurial > repos > iuc > pairtools_parse

comparison test-data/pairs_output.stats @ 0:3b5ee2bf3679 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
author iuc
date Sun, 22 Dec 2024 15:39:08 +0000
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-1:000000000000 0:3b5ee2bf3679
1 total 592
2 total_unmapped 4
3 total_single_sided_mapped 147
4 total_mapped 441
5 total_dups 0
6 total_nodups 441
7 cis 441
8 trans 0
9 pair_types/UU 405
10 pair_types/NR 119
11 pair_types/MU 21
12 pair_types/UR 19
13 pair_types/RU 17
14 pair_types/MR 6
15 pair_types/MM 4
16 pair_types/NU 1
17 cis_1kb+ 75
18 cis_2kb+ 72
19 cis_4kb+ 70
20 cis_10kb+ 67
21 cis_20kb+ 61
22 cis_40kb+ 61
23 summary/frac_cis 1.0
24 summary/frac_cis_1kb+ 0.17006802721088435
25 summary/frac_cis_2kb+ 0.16326530612244897
26 summary/frac_cis_4kb+ 0.15873015873015872
27 summary/frac_cis_10kb+ 0.15192743764172337
28 summary/frac_cis_20kb+ 0.1383219954648526
29 summary/frac_cis_40kb+ 0.1383219954648526
30 summary/frac_dups 0.0
31 summary/complexity_naive nan
32 summary/dist_freq_convergence/convergence_dist 421697
33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25
36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26
37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7
38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383
39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441
40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812
42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324
43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872
44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828
45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812
48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324
49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872
50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828
51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812
54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324
55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872
56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828
57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
59 chrom_freq/Test_seq/Test_seq 441
60 dist_freq/0-1/+- 0
61 dist_freq/0-1/-+ 0
62 dist_freq/0-1/-- 0
63 dist_freq/0-1/++ 0
64 dist_freq/1-2/+- 0
65 dist_freq/1-2/-+ 0
66 dist_freq/1-2/-- 0
67 dist_freq/1-2/++ 0
68 dist_freq/2-3/+- 0
69 dist_freq/2-3/-+ 0
70 dist_freq/2-3/-- 0
71 dist_freq/2-3/++ 0
72 dist_freq/3-4/+- 0
73 dist_freq/3-4/-+ 0
74 dist_freq/3-4/-- 0
75 dist_freq/3-4/++ 0
76 dist_freq/4-6/+- 0
77 dist_freq/4-6/-+ 0
78 dist_freq/4-6/-- 0
79 dist_freq/4-6/++ 0
80 dist_freq/6-7/+- 0
81 dist_freq/6-7/-+ 0
82 dist_freq/6-7/-- 0
83 dist_freq/6-7/++ 0
84 dist_freq/7-10/+- 0
85 dist_freq/7-10/-+ 0
86 dist_freq/7-10/-- 0
87 dist_freq/7-10/++ 0
88 dist_freq/10-13/+- 0
89 dist_freq/10-13/-+ 0
90 dist_freq/10-13/-- 0
91 dist_freq/10-13/++ 0
92 dist_freq/13-18/+- 0
93 dist_freq/13-18/-+ 0
94 dist_freq/13-18/-- 0
95 dist_freq/13-18/++ 0
96 dist_freq/18-24/+- 0
97 dist_freq/18-24/-+ 0
98 dist_freq/18-24/-- 0
99 dist_freq/18-24/++ 0
100 dist_freq/24-32/+- 0
101 dist_freq/24-32/-+ 0
102 dist_freq/24-32/-- 0
103 dist_freq/24-32/++ 0
104 dist_freq/32-42/+- 0
105 dist_freq/32-42/-+ 0
106 dist_freq/32-42/-- 0
107 dist_freq/32-42/++ 0
108 dist_freq/42-56/+- 7
109 dist_freq/42-56/-+ 0
110 dist_freq/42-56/-- 0
111 dist_freq/42-56/++ 0
112 dist_freq/56-75/+- 7
113 dist_freq/56-75/-+ 0
114 dist_freq/56-75/-- 0
115 dist_freq/56-75/++ 0
116 dist_freq/75-100/+- 2
117 dist_freq/75-100/-+ 0
118 dist_freq/75-100/-- 0
119 dist_freq/75-100/++ 0
120 dist_freq/100-133/+- 3
121 dist_freq/100-133/-+ 0
122 dist_freq/100-133/-- 0
123 dist_freq/100-133/++ 0
124 dist_freq/133-178/+- 2
125 dist_freq/133-178/-+ 0
126 dist_freq/133-178/-- 0
127 dist_freq/133-178/++ 0
128 dist_freq/178-237/+- 3
129 dist_freq/178-237/-+ 0
130 dist_freq/178-237/-- 0
131 dist_freq/178-237/++ 0
132 dist_freq/237-316/+- 57
133 dist_freq/237-316/-+ 0
134 dist_freq/237-316/-- 0
135 dist_freq/237-316/++ 0
136 dist_freq/316-422/+- 171
137 dist_freq/316-422/-+ 0
138 dist_freq/316-422/-- 0
139 dist_freq/316-422/++ 0
140 dist_freq/422-562/+- 113
141 dist_freq/422-562/-+ 0
142 dist_freq/422-562/-- 0
143 dist_freq/422-562/++ 0
144 dist_freq/562-750/+- 0
145 dist_freq/562-750/-+ 0
146 dist_freq/562-750/-- 0
147 dist_freq/562-750/++ 0
148 dist_freq/750-1000/+- 1
149 dist_freq/750-1000/-+ 0
150 dist_freq/750-1000/-- 0
151 dist_freq/750-1000/++ 0
152 dist_freq/1000-1334/+- 0
153 dist_freq/1000-1334/-+ 0
154 dist_freq/1000-1334/-- 1
155 dist_freq/1000-1334/++ 0
156 dist_freq/1334-1778/+- 1
157 dist_freq/1334-1778/-+ 0
158 dist_freq/1334-1778/-- 0
159 dist_freq/1334-1778/++ 0
160 dist_freq/1778-2371/+- 0
161 dist_freq/1778-2371/-+ 0
162 dist_freq/1778-2371/-- 0
163 dist_freq/1778-2371/++ 1
164 dist_freq/2371-3162/+- 1
165 dist_freq/2371-3162/-+ 0
166 dist_freq/2371-3162/-- 1
167 dist_freq/2371-3162/++ 0
168 dist_freq/3162-4217/+- 0
169 dist_freq/3162-4217/-+ 0
170 dist_freq/3162-4217/-- 0
171 dist_freq/3162-4217/++ 0
172 dist_freq/4217-5623/+- 0
173 dist_freq/4217-5623/-+ 0
174 dist_freq/4217-5623/-- 0
175 dist_freq/4217-5623/++ 0
176 dist_freq/5623-7499/+- 0
177 dist_freq/5623-7499/-+ 0
178 dist_freq/5623-7499/-- 0
179 dist_freq/5623-7499/++ 1
180 dist_freq/7499-10000/+- 2
181 dist_freq/7499-10000/-+ 0
182 dist_freq/7499-10000/-- 0
183 dist_freq/7499-10000/++ 0
184 dist_freq/10000-13335/+- 1
185 dist_freq/10000-13335/-+ 1
186 dist_freq/10000-13335/-- 0
187 dist_freq/10000-13335/++ 1
188 dist_freq/13335-17783/+- 1
189 dist_freq/13335-17783/-+ 1
190 dist_freq/13335-17783/-- 0
191 dist_freq/13335-17783/++ 0
192 dist_freq/17783-23714/+- 1
193 dist_freq/17783-23714/-+ 0
194 dist_freq/17783-23714/-- 0
195 dist_freq/17783-23714/++ 0
196 dist_freq/23714-31623/+- 0
197 dist_freq/23714-31623/-+ 0
198 dist_freq/23714-31623/-- 0
199 dist_freq/23714-31623/++ 0
200 dist_freq/31623-42170/+- 0
201 dist_freq/31623-42170/-+ 0
202 dist_freq/31623-42170/-- 0
203 dist_freq/31623-42170/++ 0
204 dist_freq/42170-56234/+- 0
205 dist_freq/42170-56234/-+ 1
206 dist_freq/42170-56234/-- 21
207 dist_freq/42170-56234/++ 10
208 dist_freq/56234-74989/+- 2
209 dist_freq/56234-74989/-+ 0
210 dist_freq/56234-74989/-- 1
211 dist_freq/56234-74989/++ 2
212 dist_freq/74989-100000/+- 1
213 dist_freq/74989-100000/-+ 0
214 dist_freq/74989-100000/-- 0
215 dist_freq/74989-100000/++ 1
216 dist_freq/100000-133352/+- 1
217 dist_freq/100000-133352/-+ 0
218 dist_freq/100000-133352/-- 2
219 dist_freq/100000-133352/++ 4
220 dist_freq/133352-177828/+- 2
221 dist_freq/133352-177828/-+ 3
222 dist_freq/133352-177828/-- 0
223 dist_freq/133352-177828/++ 3
224 dist_freq/177828-237137/+- 3
225 dist_freq/177828-237137/-+ 0
226 dist_freq/177828-237137/-- 0
227 dist_freq/177828-237137/++ 2
228 dist_freq/237137-316228/+- 1
229 dist_freq/237137-316228/-+ 0
230 dist_freq/237137-316228/-- 0
231 dist_freq/237137-316228/++ 0
232 dist_freq/316228-421697/+- 0
233 dist_freq/316228-421697/-+ 1
234 dist_freq/316228-421697/-- 0
235 dist_freq/316228-421697/++ 0
236 dist_freq/421697-562341/+- 0
237 dist_freq/421697-562341/-+ 0
238 dist_freq/421697-562341/-- 0
239 dist_freq/421697-562341/++ 0
240 dist_freq/562341-749894/+- 0
241 dist_freq/562341-749894/-+ 0
242 dist_freq/562341-749894/-- 0
243 dist_freq/562341-749894/++ 0
244 dist_freq/749894-1000000/+- 0
245 dist_freq/749894-1000000/-+ 0
246 dist_freq/749894-1000000/-- 0
247 dist_freq/749894-1000000/++ 0
248 dist_freq/1000000-1333521/+- 0
249 dist_freq/1000000-1333521/-+ 0
250 dist_freq/1000000-1333521/-- 0
251 dist_freq/1000000-1333521/++ 0
252 dist_freq/1333521-1778279/+- 0
253 dist_freq/1333521-1778279/-+ 0
254 dist_freq/1333521-1778279/-- 0
255 dist_freq/1333521-1778279/++ 0
256 dist_freq/1778279-2371374/+- 0
257 dist_freq/1778279-2371374/-+ 0
258 dist_freq/1778279-2371374/-- 0
259 dist_freq/1778279-2371374/++ 0
260 dist_freq/2371374-3162278/+- 0
261 dist_freq/2371374-3162278/-+ 0
262 dist_freq/2371374-3162278/-- 0
263 dist_freq/2371374-3162278/++ 0
264 dist_freq/3162278-4216965/+- 0
265 dist_freq/3162278-4216965/-+ 0
266 dist_freq/3162278-4216965/-- 0
267 dist_freq/3162278-4216965/++ 0
268 dist_freq/4216965-5623413/+- 0
269 dist_freq/4216965-5623413/-+ 0
270 dist_freq/4216965-5623413/-- 0
271 dist_freq/4216965-5623413/++ 0
272 dist_freq/5623413-7498942/+- 0
273 dist_freq/5623413-7498942/-+ 0
274 dist_freq/5623413-7498942/-- 0
275 dist_freq/5623413-7498942/++ 0
276 dist_freq/7498942-10000000/+- 0
277 dist_freq/7498942-10000000/-+ 0
278 dist_freq/7498942-10000000/-- 0
279 dist_freq/7498942-10000000/++ 0
280 dist_freq/10000000-13335214/+- 0
281 dist_freq/10000000-13335214/-+ 0
282 dist_freq/10000000-13335214/-- 0
283 dist_freq/10000000-13335214/++ 0
284 dist_freq/13335214-17782794/+- 0
285 dist_freq/13335214-17782794/-+ 0
286 dist_freq/13335214-17782794/-- 0
287 dist_freq/13335214-17782794/++ 0
288 dist_freq/17782794-23713737/+- 0
289 dist_freq/17782794-23713737/-+ 0
290 dist_freq/17782794-23713737/-- 0
291 dist_freq/17782794-23713737/++ 0
292 dist_freq/23713737-31622777/+- 0
293 dist_freq/23713737-31622777/-+ 0
294 dist_freq/23713737-31622777/-- 0
295 dist_freq/23713737-31622777/++ 0
296 dist_freq/31622777-42169650/+- 0
297 dist_freq/31622777-42169650/-+ 0
298 dist_freq/31622777-42169650/-- 0
299 dist_freq/31622777-42169650/++ 0
300 dist_freq/42169650-56234133/+- 0
301 dist_freq/42169650-56234133/-+ 0
302 dist_freq/42169650-56234133/-- 0
303 dist_freq/42169650-56234133/++ 0
304 dist_freq/56234133-74989421/+- 0
305 dist_freq/56234133-74989421/-+ 0
306 dist_freq/56234133-74989421/-- 0
307 dist_freq/56234133-74989421/++ 0
308 dist_freq/74989421-100000000/+- 0
309 dist_freq/74989421-100000000/-+ 0
310 dist_freq/74989421-100000000/-- 0
311 dist_freq/74989421-100000000/++ 0
312 dist_freq/100000000-133352143/+- 0
313 dist_freq/100000000-133352143/-+ 0
314 dist_freq/100000000-133352143/-- 0
315 dist_freq/100000000-133352143/++ 0
316 dist_freq/133352143-177827941/+- 0
317 dist_freq/133352143-177827941/-+ 0
318 dist_freq/133352143-177827941/-- 0
319 dist_freq/133352143-177827941/++ 0
320 dist_freq/177827941-237137371/+- 0
321 dist_freq/177827941-237137371/-+ 0
322 dist_freq/177827941-237137371/-- 0
323 dist_freq/177827941-237137371/++ 0
324 dist_freq/237137371-316227766/+- 0
325 dist_freq/237137371-316227766/-+ 0
326 dist_freq/237137371-316227766/-- 0
327 dist_freq/237137371-316227766/++ 0
328 dist_freq/316227766-421696503/+- 0
329 dist_freq/316227766-421696503/-+ 0
330 dist_freq/316227766-421696503/-- 0
331 dist_freq/316227766-421696503/++ 0
332 dist_freq/421696503-562341325/+- 0
333 dist_freq/421696503-562341325/-+ 0
334 dist_freq/421696503-562341325/-- 0
335 dist_freq/421696503-562341325/++ 0
336 dist_freq/562341325-749894209/+- 0
337 dist_freq/562341325-749894209/-+ 0
338 dist_freq/562341325-749894209/-- 0
339 dist_freq/562341325-749894209/++ 0
340 dist_freq/749894209-1000000000/+- 0
341 dist_freq/749894209-1000000000/-+ 0
342 dist_freq/749894209-1000000000/-- 0
343 dist_freq/749894209-1000000000/++ 0
344 dist_freq/1000000000+/+- 0
345 dist_freq/1000000000+/-+ 0
346 dist_freq/1000000000+/-- 0
347 dist_freq/1000000000+/++ 0
348 chromsizes/Test_seq 450060