Mercurial > repos > iuc > package_vcftools_0_1_12b

comparison tool_dependencies.xml @ 1:e61fc50f2f41 draft default tip

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author iuc
date Mon, 11 Aug 2014 08:58:06 -0400
parents 1ffb90a1805a
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0:1ffb90a1805a 1:e61fc50f2f41
8 <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action> 8 <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action>
9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> 9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> 10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action>
11 <action type="set_environment"> 11 <action type="set_environment">
12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
13 <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/vcftools/lib/perl5/site_perl</environment_variable>
13 </action> 14 </action>
14 </actions> 15 </actions>
15 </install> 16 </install>
16 <readme> 17 <readme>
17 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. 18 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.