Mercurial > repos > iuc > package_ucsc_tools_312

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 743caa3d7198c38c8f3d9f90e4aae16f76cfd7f2
author iuc
date Tue, 22 Sep 2015 13:16:59 -0400
parents 34e9010db346
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34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
iuc
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1 <?xml version='1.0' encoding='utf-8'?>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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2 <tool_dependency>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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3 <package name="ucsc_tools" version="312">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
iuc
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4 <install version="1.0">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
iuc
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5 <actions_group>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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6 <actions architecture="x86_64" os="linux">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/ucsc/ucsc-312-Linux-x86_64.tar.gz</action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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8 <action type="shell_command">rm ucsc-312-Linux-x86_64.tar.gz</action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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9 <action type="move_directory_files">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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10 <source_directory>.</source_directory>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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11 <destination_directory>$INSTALL_DIR</destination_directory>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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12 </action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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13 </actions>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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14 <!--actions architecture="x86_64" os="darwin">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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15 <action type="download_by_url"></action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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16 <action type="move_directory_files">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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17 <source_directory>.</source_directory>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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18 <destination_directory>$INSTALL_DIR/bin</destination_directory>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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19 </action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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20 </actions-->
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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21 <action type="set_environment">
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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ceda74761368 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 743caa3d7198c38c8f3d9f90e4aae16f76cfd7f2
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23 <!-- We are building these libraries now against an old version of libc,
ceda74761368 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 743caa3d7198c38c8f3d9f90e4aae16f76cfd7f2
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24 so we hopefully do not need the libs anymore. They also seem to make trouble when the old glibc is in LD_LIBRARY_PATH
ceda74761368 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 743caa3d7198c38c8f3d9f90e4aae16f76cfd7f2
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25 but other tools are compiled against a newer version.
ceda74761368 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 743caa3d7198c38c8f3d9f90e4aae16f76cfd7f2
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26 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable-->
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34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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27 <environment_variable name="UCSC_TOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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28 </action>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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29 </actions_group>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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30 </install>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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31 <readme>The well known UCSC tools from Jim Kent.</readme>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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32 </package>
34e9010db346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_312 commit 22168811c93658ecf0613c985ec8d16e1ab00ff9
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33 </tool_dependency>