Mercurial > repos > iuc > package_tpp_4_7_0
diff tool_dependencies.xml @ 7:f732cb0203cb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_7_0 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Thu, 16 Jul 2015 14:01:40 -0400 |
| parents | e4d50b87c220 |
| children | ce629de7e06c |
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--- a/tool_dependencies.xml Mon Jun 01 22:51:33 2015 -0400 +++ b/tool_dependencies.xml Thu Jul 16 14:01:40 2015 -0400 @@ -4,7 +4,7 @@ <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="perl" version="5.18.1"> - <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="expat" version="2.1.0"> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> @@ -25,7 +25,7 @@ <install version="1.0"> <actions> <action type="setup_perl_environment"> - <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> @@ -93,14 +93,14 @@ <!-- do not use the build-in boost version Boost version 1.54 is known to have a build bug and can't be used on some systems without a patch. --> - <action type="shell_command">sed -i -e 's/# www.boost.org/ifeq "$(strip $(BOOST_LIBDIR))" ""/' Makefile.incl</action> - <action type="shell_command">sed -i -e 's/# Proteowizrd/endif/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# www.boost.org/ifeq "$(strip $(BOOST_LIBDIR))" ""/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# Proteowizrd/endif/' Makefile.incl</action> <!-- replace build-in expat library with the more recent toolshed one --> - <action type="shell_command">sed -i -e 's/# Build expat library/ifeq "$(strip $(EXPAT_LIB))" ""/' Makefile.incl</action> - <action type="shell_command">sed -i -e 's/# Build HDF5/endif\n# Build HDF5/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# Build expat library/ifeq "$(strip $(EXPAT_LIB))" ""/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# Build HDF5/endif\n# Build HDF5/' Makefile.incl</action> - <action type="shell_command">sed -i -e 's/# HTMLDOC/ifeq "$(strip $(HTMLDOC_BIN))" "not-needed"/' Makefile.incl</action> - <action type="shell_command">sed -i -e 's/# put common.*/endif/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# HTMLDOC/ifeq "$(strip $(HTMLDOC_BIN))" "not-needed"/' Makefile.incl</action> + <action type="shell_command">sed -i.bak -e 's/# put common.*/endif/' Makefile.incl</action> <action type="shell_command">cat Makefile.incl > /home/bag/makefile.incl.txt</action> @@ -110,9 +110,9 @@ TPP is fails with a error due to an deprecated use of qw() See the rant @ http://blogs.perl.org/users/rurban/2010/09/qw-in-list-context-deprecated.html --> - <!--<action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/tpp_models.pl</action>--> - <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> - <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> + <!--<action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../perl/tpp_models.pl</action>--> + <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> + <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> <action type="shell_command">echo '' > ../perl/tpp_models.pl</action> <action type="shell_command">make</action>