Mercurial > repos > iuc > package_tpp_4_7_0

comparison tool_dependencies.xml @ 8:ce629de7e06c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_7_0 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
author iuc
date Fri, 09 Oct 2015 05:17:38 -0400
parents f732cb0203cb
children 5d695df7cfa1
comparison
equal deleted inserted replaced
7:f732cb0203cb 8:ce629de7e06c
2 <tool_dependency> 2 <tool_dependency>
3 <package name="libgd" version="2.1.0"> 3 <package name="libgd" version="2.1.0">
4 <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="perl" version="5.18.1"> 6 <package name="perl" version="5.18.1">
7 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="expat" version="2.1.0"> 9 <package name="expat" version="2.1.0">
10 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="bzlib" version="1.0.6"> 12 <package name="bzlib" version="1.0.6">
13 <repository changeset_revision="70832954fc3c" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="6ebf4fdf5359" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="libpng" version="1.2.5"> 15 <package name="libpng" version="1.2.5">
16 <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="boost" version="1.55.0"> 18 <package name="boost" version="1.55.0">
23 </package> 23 </package>
24 <package name="trans_proteomic_pipeline" version="4.7.0"> 24 <package name="trans_proteomic_pipeline" version="4.7.0">
25 <install version="1.0"> 25 <install version="1.0">
26 <actions> 26 <actions>
27 <action type="setup_perl_environment"> 27 <action type="setup_perl_environment">
28 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 28 <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
29 <package name="perl" version="5.18.1" /> 29 <package name="perl" version="5.18.1" />
30 </repository> 30 </repository>
31 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
32 <package name="expat" version="2.1.0" /> 32 <package name="expat" version="2.1.0" />
33 </repository> 33 </repository>
48 <package name="libgd" version="2.1.0" /> 48 <package name="libgd" version="2.1.0" />
49 </repository> 49 </repository>
50 <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 50 <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
51 <package name="libpng" version="1.2.5" /> 51 <package name="libpng" version="1.2.5" />
52 </repository> 52 </repository>
53 <repository changeset_revision="70832954fc3c" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 53 <repository changeset_revision="6ebf4fdf5359" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
54 <package name="bzlib" version="1.0.6" /> 54 <package name="bzlib" version="1.0.6" />
55 </repository> 55 </repository>
56 <repository changeset_revision="2f252646583b" name="package_boost_1_55" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 56 <repository changeset_revision="2f252646583b" name="package_boost_1_55" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
57 <package name="boost" version="1.55.0" /> 57 <package name="boost" version="1.55.0" />
58 </repository> 58 </repository>
84 <action type="shell_command">echo 'LIBEXT=a' &gt;&gt; Makefile.config.incl</action> 84 <action type="shell_command">echo 'LIBEXT=a' &gt;&gt; Makefile.config.incl</action>
85 <!--action type="shell_command">echo "BZ2_LIB=$BZLIB_LIB_DIR/libbz2.a" &gt;&gt; Makefile.config.incl</action--> 85 <!--action type="shell_command">echo "BZ2_LIB=$BZLIB_LIB_DIR/libbz2.a" &gt;&gt; Makefile.config.incl</action-->
86 86
87 <action type="shell_command">echo "EXPAT_LIB=$EXPAT_ROOT_DIR/lib/libexpat.a" &gt;&gt; Makefile.config.incl</action> 87 <action type="shell_command">echo "EXPAT_LIB=$EXPAT_ROOT_DIR/lib/libexpat.a" &gt;&gt; Makefile.config.incl</action>
88 <action type="shell_command">echo "EXPAT_INCL=$EXPAT_ROOT_DIR/include/" &gt;&gt; Makefile.config.incl</action> 88 <action type="shell_command">echo "EXPAT_INCL=$EXPAT_ROOT_DIR/include/" &gt;&gt; Makefile.config.incl</action>
89
90 <action type="shell_command">cat Makefile.config.incl &gt; /home/bag/blablabla.txt</action>
91
92 89
93 <!-- do not use the build-in boost version 90 <!-- do not use the build-in boost version
94 Boost version 1.54 is known to have a build bug and can't be used on some systems without a patch. 91 Boost version 1.54 is known to have a build bug and can't be used on some systems without a patch.
95 --> 92 -->
96 <action type="shell_command">sed -i.bak -e 's/# www.boost.org/ifeq "$(strip $(BOOST_LIBDIR))" ""/' Makefile.incl</action> 93 <action type="shell_command">sed -i.bak -e 's/# www.boost.org/ifeq "$(strip $(BOOST_LIBDIR))" ""/' Makefile.incl</action>