Mercurial > repos > iuc > package_tpp_4_6_3
diff tool_dependencies.xml @ 7:6ad62d7ded0c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_6_3 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Thu, 16 Jul 2015 14:01:03 -0400 |
| parents | 4d810aece5f1 |
| children | 7fb7c8a17c87 |
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--- a/tool_dependencies.xml Mon Jun 01 22:52:16 2015 -0400 +++ b/tool_dependencies.xml Thu Jul 16 14:01:03 2015 -0400 @@ -4,7 +4,7 @@ <repository changeset_revision="88f469bfafbf" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="perl" version="5.18.1"> - <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="expat" version="2.1.0"> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> @@ -19,7 +19,7 @@ <install version="1.0"> <actions> <action type="setup_perl_environment"> - <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> @@ -45,7 +45,7 @@ <repository changeset_revision="70832954fc3c" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="bzlib" version="1.0.6" /> </repository> - <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> @@ -72,9 +72,9 @@ TPP is fails with a error due to an deprecated use of qw() See the rant @ http://blogs.perl.org/users/rurban/2010/09/qw-in-list-context-deprecated.html --> - <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/tpp_models.pl</action> - <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> - <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> + <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../perl/tpp_models.pl</action> + <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> + <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> <!--action type="shell_command">echo '' > ../perl/tpp_models.pl</action--> <action type="shell_command">export PERL5LIB=$INSTALL_DIR/lib/perl5/:$PERL5LIB && export PATH=$PERL_ROOT_DIR/bin/:$PATH && export PERL5LIB=$PERL_ROOT_DIR/lib/perl5:$PERL5LIB && make</action>