# HG changeset patch # User iuc # Date 1424277326 18000 # Node ID 54f8b9bf9b6cfdc34c42a2de4aa053a9041e86a7 # Parent c1743e071a28dcd7ab41f04e6723f43198aa1c98 Uploaded diff -r c1743e071a28 -r 54f8b9bf9b6c tool_dependencies.xml --- a/tool_dependencies.xml Wed Aug 06 17:19:24 2014 -0400 +++ b/tool_dependencies.xml Wed Feb 18 11:35:26 2015 -0500 @@ -23,10 +23,10 @@ Installs tabix version 0.2.6. Available binaries: tabix, bgzip http://samtools.sourceforge.net/tabix.shtml - Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file in.tab.bgz.tbi when region is absent from the command-line. - The input data file must be position sorted and compressed by bgzip which has a gzip(1) like interface. After indexing, - tabix is able to quickly retrieve data lines overlapping regions specified in the format "chr:beginPos-endPos". - Fast data retrieval also works over network if URI is given as a file name and in this case the index file will be downloaded if it is not present locally. + Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file in.tab.bgz.tbi when region is absent from the command-line. + The input data file must be position sorted and compressed by bgzip which has a gzip(1) like interface. After indexing, + tabix is able to quickly retrieve data lines overlapping regions specified in the format "chr:beginPos-endPos". + Fast data retrieval also works over network if URI is given as a file name and in this case the index file will be downloaded if it is not present locally.