Mercurial > repos > iuc > package_tabix_0_2_6

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author iuc
date Wed, 18 Feb 2015 11:35:26 -0500
parents c1743e071a28
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0:c1743e071a28 1:54f8b9bf9b6c
21 </install> 21 </install>
22 <readme> 22 <readme>
23 Installs tabix version 0.2.6. Available binaries: tabix, bgzip 23 Installs tabix version 0.2.6. Available binaries: tabix, bgzip
24 http://samtools.sourceforge.net/tabix.shtml 24 http://samtools.sourceforge.net/tabix.shtml
25 25
26 Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file in.tab.bgz.tbi when region is absent from the command-line. 26 Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file in.tab.bgz.tbi when region is absent from the command-line.
27 The input data file must be position sorted and compressed by bgzip which has a gzip(1) like interface. After indexing, 27 The input data file must be position sorted and compressed by bgzip which has a gzip(1) like interface. After indexing,
28 tabix is able to quickly retrieve data lines overlapping regions specified in the format "chr:beginPos-endPos". 28 tabix is able to quickly retrieve data lines overlapping regions specified in the format "chr:beginPos-endPos".
29 Fast data retrieval also works over network if URI is given as a file name and in this case the index file will be downloaded if it is not present locally. 29 Fast data retrieval also works over network if URI is given as a file name and in this case the index file will be downloaded if it is not present locally.
30 </readme> 30 </readme>
31 </package> 31 </package>
32 </tool_dependency> 32 </tool_dependency>