Mercurial > repos > iuc > package_subread_1_4_6_p5
comparison tool_dependencies.xml @ 0:166fce030d7c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
| author | iuc |
|---|---|
| date | Fri, 01 Jul 2016 03:14:37 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:166fce030d7c |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="subread" version="1.4.6p5"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url" | |
| 7 sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action> | |
| 8 <action type="shell_command"><![CDATA[ | |
| 9 cd src/ && make -f Makefile.Linux | |
| 10 ]]></action> | |
| 11 <action type="move_directory_files"> | |
| 12 <source_directory>bin</source_directory> | |
| 13 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 14 </action> | |
| 15 <action type="set_environment"> | |
| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/utilities</environment_variable> | |
| 18 </action> | |
| 19 </actions> | |
| 20 </install> | |
| 21 <readme> | |
| 22 Downloads and installs the Subread package containing: | |
| 23 - exactSNP | |
| 24 - featureCounts | |
| 25 - subindel | |
| 26 - subjunc | |
| 27 - subread-align | |
| 28 - subread-buildindex | |
| 29 | |
| 30 with the corresponding utilities: | |
| 31 * coverageCount | |
| 32 * globalReassembly | |
| 33 * propmapped | |
| 34 * qualityScores | |
| 35 * removeDup | |
| 36 * subread-fullscan | |
| 37 * subtools | |
| 38 | |
| 39 http://subread.sourceforge.net/ | |
| 40 </readme> | |
| 41 </package> | |
| 42 </tool_dependency> |