Mercurial > repos > iuc > package_stringtie_1_0_1
comparison tool_dependencies.xml @ 0:2238c6c6d46a draft default tip
Imported from capsule None
| author | iuc |
|---|---|
| date | Thu, 05 Mar 2015 10:55:57 -0500 |
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| children |
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| -1:000000000000 | 0:2238c6c6d46a |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="stringtie" version="1.0.1"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <actions architecture="x86_64" os="linux"> | |
| 7 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.Linux_x86_64.tar.gz</action> | |
| 8 <action type="move_file"> | |
| 9 <source>stringtie</source> | |
| 10 <destination>$INSTALL_DIR/bin</destination> | |
| 11 </action> | |
| 12 </actions> | |
| 13 <actions architecture="x86_64" os="darwin"> | |
| 14 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.OSX_x86_64.tar.gz</action> | |
| 15 <action type="move_file"> | |
| 16 <source>stringtie</source> | |
| 17 <destination>$INSTALL_DIR/bin</destination> | |
| 18 </action> | |
| 19 </actions> | |
| 20 <actions> | |
| 21 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.tar.gz</action> | |
| 22 <action type="shell_command">make release</action> | |
| 23 <action type="move_file"> | |
| 24 <source>stringtie</source> | |
| 25 <destination>$INSTALL_DIR/bin</destination> | |
| 26 </action> | |
| 27 </actions> | |
| 28 <action type="set_environment"> | |
| 29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 30 </action> | |
| 31 </actions_group> | |
| 32 </install> | |
| 33 <readme>StringTie is a fast and highly efficient assembler of RNA-Seq | |
| 34 alignments into potential transcripts. It is primarily a genome-guided | |
| 35 transcriptome assembler, although it can borrow algorithmic techniques | |
| 36 from de novo genome assembly to help with transcript assembly. Its input | |
| 37 can include not only the spliced read alignments used by reference-based | |
| 38 assemblers, but also longer contigs that were assembled de novo from | |
| 39 unambiguous, non-branching parts of a transcript.</readme> | |
| 40 </package> | |
| 41 </tool_dependency> |