Mercurial > repos > iuc > package_sra_toolkit_2_6_2

comparison tool_dependencies.xml @ 1:635c214d2e01 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit d04a4c3b62d9a9decc3e27e6bee7a007f47b3d73
author iuc
date Tue, 17 May 2016 06:57:10 -0400
parents 4503178d0713
children
comparison
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0:4503178d0713 1:635c214d2e01
5 </package> 5 </package>
6 <package name="libmagic" version="5.25"> 6 <package name="libmagic" version="5.25">
7 <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="ncbi_vdb" version="2.6.2"> 9 <package name="ncbi_vdb" version="2.6.2">
10 <repository changeset_revision="62f37b0b1373" name="package_ncbi_vdb_2_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="1b2990f1663b" name="package_ncbi_vdb_2_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="ngs_sdk" version="1.2.3"> 12 <package name="ngs_sdk" version="1.2.3">
13 <repository changeset_revision="af8bc70ca765" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="03bfda5a7f9f" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="sra_toolkit" version="2.6.2"> 15 <package name="sra_toolkit" version="2.6.2">
16 <install version="1.0"> 16 <install version="1.0">
17 <actions> 17 <actions>
18 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.6.2.tar.gz</action> 18 <action sha256sum="7aa1ec118486cd877bf2976818a3f319674584f3d04931a6ce2a92f6a9defbc1" type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.6.2.tar.gz</action>
19 <action type="set_environment_for_install"> 19 <action type="set_environment_for_install">
20 <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 20 <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
21 <package name="perl" version="5.18.1" /> 21 <package name="perl" version="5.18.1" />
22 </repository> 22 </repository>
23 <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 23 <repository changeset_revision="c7b9857a1522" name="package_libmagic_5_25" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
24 <package name="libmagic" version="5.25" /> 24 <package name="libmagic" version="5.25" />
25 </repository> 25 </repository>
26 <repository changeset_revision="62f37b0b1373" name="package_ncbi_vdb_2_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="1b2990f1663b" name="package_ncbi_vdb_2_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
27 <package name="ncbi_vdb" version="2.6.2" /> 27 <package name="ncbi_vdb" version="2.6.2" />
28 </repository> 28 </repository>
29 <repository changeset_revision="af8bc70ca765" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 29 <repository changeset_revision="03bfda5a7f9f" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
30 <package name="ngs_sdk" version="1.2.3" /> 30 <package name="ngs_sdk" version="1.2.3" />
31 </repository> 31 </repository>
32 </action> 32 </action>
33 <action type="shell_command"> 33 <action type="shell_command">
34 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR 34 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR