Mercurial > repos > iuc > package_snpeff_4_1

comparison tool_dependencies.xml @ 4:733a2dcb9853 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_snpeff_4_1 commit d12a2e9dd273b4c23db48bbb747f32700887710e
author iuc
date Tue, 07 Jun 2016 09:39:14 -0400
parents 625bc8f7929d
children
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3:625bc8f7929d 4:733a2dcb9853
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="snpEff" version="4.1"> 3 <package name="snpEff" version="4.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">https://downloads.sourceforge.net/project/snpeff/snpEff_v4_1_core.zip</action> 6 <action type="download_by_url" sha256sum="1d5b2831c631a175b88bac57aefddea6f79588ef2ccbac8505f66e0961e54bf5">https://downloads.sourceforge.net/project/snpeff/snpEff_v4_1l_core.zip</action>
7 <action type="move_directory_files"> 7 <action type="move_directory_files">
8 <source_directory>.</source_directory> 8 <source_directory>.</source_directory>
9 <destination_directory>$INSTALL_DIR</destination_directory> 9 <destination_directory>$INSTALL_DIR</destination_directory>
10 </action> 10 </action>
11 <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action> 11 <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action>