Mercurial > repos > iuc > package_scikit_learn_0_14

comparison tool_dependencies.xml @ 0:1d85ad4b0797 draft

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author iuc
date Mon, 06 Apr 2015 16:08:57 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="11099cc214d5" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="scipy" version="0.12.0">
7 <repository changeset_revision="d607515b0510" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="matplotlib" version="1.2.1">
10 <repository changeset_revision="9f3e58477115" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="scikit_learn" version="0.14.1">
13 <install version="1.0">
14 <actions>
15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.14.1.tar.gz</action>
16 <action type="set_environment_for_install">
17 <repository changeset_revision="73854db866e7" name="package_lapack_3_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
18 <package name="lapack" version="3.4.2" />
19 </repository>
20 <repository changeset_revision="11099cc214d5" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
21 <package name="numpy" version="1.7.1" />
22 </repository>
23 <repository changeset_revision="d607515b0510" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
24 <package name="scipy" version="0.12.0" />
25 </repository>
26 <repository changeset_revision="9f3e58477115" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
27 <package name="matplotlib" version="1.2.1" />
28 </repository>
29 </action>
30
31 <action type="make_directory">$INSTALL_DIR/lib/python</action>
32 <action language="cheetah" type="template_command">
33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
34
35 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
37
38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python
39 </action>
40 <action type="set_environment">
41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
43 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
44 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
45 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
46 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
47 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
48
49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
50 </action>
51 </actions>
52 </install>
53 <readme>
54 Compiling scikit-learn requires a C compiler (typically gcc).
55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
56
57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
58 </readme>
59 </package>
60 </tool_dependency>