Mercurial > repos > iuc > package_scikit_learn_0_14
annotate tool_dependencies.xml @ 9:17895fb2454a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:39:06 -0500 |
| parents | 8646141927a5 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="numpy" version="1.7.1"> | |
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d08f0ee7ed1f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
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4 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="scipy" version="0.12.0"> | |
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8646141927a5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit c5b99dd9482d52035bbfec5ac717f60ef968e989-dirty
iuc
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7 <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 8 </package> |
| 9 <package name="matplotlib" version="1.2.1"> | |
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17895fb2454a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
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8
diff
changeset
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10 <repository changeset_revision="8df10d8dc7f5" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 11 </package> |
| 12 <package name="scikit_learn" version="0.14.1"> | |
| 13 <install version="1.0"> | |
| 14 <actions> | |
| 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.14.1.tar.gz</action> | |
| 16 <action type="set_environment_for_install"> | |
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17895fb2454a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
8
diff
changeset
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17 <repository changeset_revision="b5caa0c1be7b" name="package_lapack_3_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 18 <package name="lapack" version="3.4.2" /> |
| 19 </repository> | |
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7
d08f0ee7ed1f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
6
diff
changeset
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20 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 21 <package name="numpy" version="1.7.1" /> |
| 22 </repository> | |
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8646141927a5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit c5b99dd9482d52035bbfec5ac717f60ef968e989-dirty
iuc
parents:
7
diff
changeset
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23 <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 24 <package name="scipy" version="0.12.0" /> |
| 25 </repository> | |
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9
17895fb2454a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
8
diff
changeset
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26 <repository changeset_revision="8df10d8dc7f5" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 27 <package name="matplotlib" version="1.2.1" /> |
| 28 </repository> | |
| 29 </action> | |
| 30 | |
| 31 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 32 <action language="cheetah" type="template_command"> | |
| 33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && | |
| 34 | |
| 35 export PATH=\$PATH:$env.PATH_NUMPY && | |
| 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && | |
| 37 | |
| 38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | |
| 39 </action> | |
| 40 <action type="set_environment"> | |
| 41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 43 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
| 44 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
| 45 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> | |
| 46 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> | |
| 47 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
| 48 | |
| 49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
| 50 </action> | |
| 51 </actions> | |
| 52 </install> | |
| 53 <readme> | |
| 54 Compiling scikit-learn requires a C compiler (typically gcc). | |
| 55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. | |
| 56 | |
| 57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies | |
| 58 </readme> | |
| 59 </package> | |
| 60 </tool_dependency> |