Mercurial > repos > iuc > package_samtools_1_2

comparison tool_dependencies.xml @ 8:9cd278d52bb6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_samtools_1_2 commit 6dbfa1702715b9829933c743ec0a6ace61303a74
author iuc
date Tue, 07 Jul 2015 06:21:42 -0400
parents 8d3a21e43004
children 192f00129358
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equal deleted inserted replaced
7:8d3a21e43004 8:9cd278d52bb6
27 <source>samtools</source> 27 <source>samtools</source>
28 <destination>$INSTALL_DIR/bin</destination> 28 <destination>$INSTALL_DIR/bin</destination>
29 </action> 29 </action>
30 <action type="shell_command">cd htslib-1.2.1 &amp;&amp; make bgzip tabix</action> 30 <action type="shell_command">cd htslib-1.2.1 &amp;&amp; make bgzip tabix</action>
31 <action type="move_file"> 31 <action type="move_file">
32 <source>bgzip</source> 32 <source>htslib-1.2.1/bgzip</source>
33 <destination>$INSTALL_DIR/bin</destination> 33 <destination>$INSTALL_DIR/bin</destination>
34 </action> 34 </action>
35 <action type="move_file"> 35 <action type="move_file">
36 <source>tabix</source> 36 <source>htslib-1.2.1/tabix</source>
37 <destination>$INSTALL_DIR/bin</destination> 37 <destination>$INSTALL_DIR/bin</destination>
38 </action> 38 </action>
39 </actions> 39 </actions>
40 <action type="set_environment"> 40 <action type="set_environment">
41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>